BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0301.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent...   578   e-166

>gi|300309670|ref|YP_003773762.1| S-adenosyl-methionine-dependent
           methyltransferase MraW protein [Herbaspirillum
           seropedicae SmR1]
          Length = 324

 Score =  578 bits (1489), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/314 (94%), Positives = 308/314 (98%)

Query: 1   MNLQPVPELQHRTVLLDEAVEALAITGARANGIYLDGTFGRGGHSRAILSRLGPQGRLIA 60
           MNLQPVPELQHRTVLL+EAV+ALAI G RANG+YLDGTFGRGGHSRAILSRLGPQGRLIA
Sbjct: 1   MNLQPVPELQHRTVLLEEAVDALAIEGERANGVYLDGTFGRGGHSRAILSRLGPQGRLIA 60

Query: 61  FDKDPLAIATAQKIADARFEIVHDSFATMDEALAARGIAQVDGVLMDLGISSPQVDDAAR 120
           FDKDPLAIATAQKIAD RFEIVHDSFATMD+ALA RGIA+VDGVLMDLGISSPQVDDAAR
Sbjct: 61  FDKDPLAIATAQKIADPRFEIVHDSFATMDQALAERGIARVDGVLMDLGISSPQVDDAAR 120

Query: 121 GFSFRLDGPLDMRMDTTRGVSAADWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAI 180
           GFSFRLDGPLDMRMDTTRGVSAA+WLATADEQQIAKVIRDYGEERFALQIAKKIVAGRA+
Sbjct: 121 GFSFRLDGPLDMRMDTTRGVSAAEWLATADEQQIAKVIRDYGEERFALQIAKKIVAGRAV 180

Query: 181 EPISSTRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELEVGLDKAFAQMAQHG 240
           EPISSTRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELEVGL+KAFAQMAQHG
Sbjct: 181 EPISSTRQLAALVAQAVKTREKGKDPATRTFQAVRIFVNQELEELEVGLEKAFAQMAQHG 240

Query: 241 RLVVISFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPRVMPSAAEVESN 300
           RLVVISFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPRVMPSA EVE+N
Sbjct: 241 RLVVISFHSLEDRIVKQFMASKAHAPQPDRRLPIRAVDLPQAPARLLPRVMPSAGEVEAN 300

Query: 301 PRARSAVMRGLERV 314
           PRARSAVMRGLE +
Sbjct: 301 PRARSAVMRGLELI 314


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 999,894
Number of extensions: 42094
Number of successful extensions: 191
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)