BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0296.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309665|ref|YP_003773757.1| 2,4-dihydroxyhept-2-ene-1,7-dio...   457   e-130

>gi|300309665|ref|YP_003773757.1| 2,4-dihydroxyhept-2-ene-1,7-dioic
           acid aldolase [Herbaspirillum seropedicae SmR1]
          Length = 250

 Score =  457 bits (1175), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 220/250 (88%), Positives = 234/250 (93%)

Query: 1   MRENRLRTLFAHKQLALCGWVSMGNSLLAEVIAHSGYDAVTVDLQHGPFSIESALPMLQA 60
           MRENRLRTLFA +QLAL GWVSMGN+LLAEVIAHSGYDAVTVDLQHGPFSI++ALPMLQA
Sbjct: 1   MRENRLRTLFAQQQLALSGWVSMGNALLAEVIAHSGYDAVTVDLQHGPFSIDAALPMLQA 60

Query: 61  ISSTSAVPLVRCSESSLGEINKLLDAGAYGVICPLINTADDAERFIRACHYSPRGGRSFG 120
           ISST AVPLVRCSE+SLGEINKLLDAGAYGVICPLINTA DAERF+RACHYSPRGGRS+G
Sbjct: 61  ISSTPAVPLVRCSENSLGEINKLLDAGAYGVICPLINTAADAERFVRACHYSPRGGRSYG 120

Query: 121 PARGLLYGGEDYFKHANTTVLTLAMIETREGYANAQAILKVPDLDGIFIGPSDLAIELGL 180
           PARG LYGG DYF HAN T+LTLAMIETREGYANA+AIL+ PDLDGIFIGPSDLAIELGL
Sbjct: 121 PARGFLYGGADYFTHANATLLTLAMIETREGYANAEAILQTPDLDGIFIGPSDLAIELGL 180

Query: 181 APDAYDAPRLNDAIEHLLTLARTLGKYVGIFAGSMDMAQRMKEIGMDLVVPGTDIQQIKT 240
           APDAYD  RLN+AI+HLL LAR LGKYVGIFAG+M+MAQRMK IGMDLVVPGTDIQQIK 
Sbjct: 181 APDAYDDVRLNEAIDHLLALARKLGKYVGIFAGTMEMAQRMKGIGMDLVVPGTDIQQIKA 240

Query: 241 EGVRRVSALR 250
           EG RRVSALR
Sbjct: 241 EGARRVSALR 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,954
Number of extensions: 33035
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)