BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0285.p
         (515 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309654|ref|YP_003773746.1| sulfate permease family protein...   909   0.0  

>gi|300309654|ref|YP_003773746.1| sulfate permease family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 501

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/499 (92%), Positives = 474/499 (94%)

Query: 17  AHSLPMTTIATPPSRLRELRQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFICT 76
           A  LPMTTI TP SRLR+LRQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFICT
Sbjct: 3   AELLPMTTITTPTSRLRDLRQNVLAGLTTSFALVPECIAFALVAQLNPLMGLYGAFFICT 62

Query: 77  ITALFGGRPGMISGAAGSMAVVIVALVVQHGAQYFLATVVLSGLIMLAFGALRLGKLVRM 136
           ITALFGGRPGMISGAAGSMAVVIVALVVQHGAQYFLATVVLSGLIMLAFGALRLGKLVRM
Sbjct: 63  ITALFGGRPGMISGAAGSMAVVIVALVVQHGAQYFLATVVLSGLIMLAFGALRLGKLVRM 122

Query: 137 VPHPVMLGFVNGLAIVIALSQLEHFRLHTDSGLHWLQGSALLIMIGLTLATMLIVWLLPR 196
           VPHPVMLGFVNGLAIVIALSQLEHFR+ T +G  WLQGSAL +MI LTLATMLIVWLLPR
Sbjct: 123 VPHPVMLGFVNGLAIVIALSQLEHFRIATAAGTQWLQGSALWVMIALTLATMLIVWLLPR 182

Query: 197 VTKAIPPALAAILTVGLVTYVSGLHTRTLGDMAQIAGGLPPLHWPSVPMNLETLHIIGPY 256
           VTKA+PPALAAIL VGLVTY SGLHTRTL DMAQIAGGLPPLH PSVP+ LETL IIGPY
Sbjct: 183 VTKAVPPALAAILGVGLVTYASGLHTRTLADMAQIAGGLPPLHLPSVPLTLETLRIIGPY 242

Query: 257 AVLMAIVGLLETLLTFNLTDEITASRGQPNRECLALGAANIVSGLFGGMGGCAMIGQTMI 316
           AVLMAIVGLLETLLTFNLTDEITA+RGQPNRECLALGAANIVSGLFGGMGGCAMIGQTMI
Sbjct: 243 AVLMAIVGLLETLLTFNLTDEITATRGQPNRECLALGAANIVSGLFGGMGGCAMIGQTMI 302

Query: 317 NLGSGGRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWGSLRVLGK 376
           NLGSGGRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWGSLRVLGK
Sbjct: 303 NLGSGGRSRLSGVVAGVMILLFILFLSPAIERIPLAALAGVMFVVAQETFAWGSLRVLGK 362

Query: 377 VPRSDALVIIAVTIITVLTDLAVAVLCGIVIAALNFAWQHAREVRAEQRDEADGSRTYLP 436
           VPRSDALVIIAVT+ITVLTDLAVAVLCGIVIAALNFAWQHAREVR++ RDE DGSRTYLP
Sbjct: 363 VPRSDALVIIAVTVITVLTDLAVAVLCGIVIAALNFAWQHAREVRSDVRDEDDGSRTYLP 422

Query: 437 HGTLFFASTTRFLELFDTQNDPQQVTLDCRYLRLADHSAIAAVQTLAERYVRAGKVLRVM 496
           HGTLFFASTT FL LFDT NDPQ+VTLDCR+LRLADHSAIAAVQTLAERY R GK LRV+
Sbjct: 423 HGTLFFASTTHFLALFDTGNDPQEVTLDCRHLRLADHSAIAAVQTLAERYTRMGKQLRVV 482

Query: 497 ALSQRCSQLLQRAGLPDVA 515
           ALSQRCSQLLQRAGLP VA
Sbjct: 483 ALSQRCSQLLQRAGLPQVA 501


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,454,560
Number of extensions: 58855
Number of successful extensions: 324
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 426
Effective length of database: 1,198,455
Effective search space: 510541830
Effective search space used: 510541830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)