BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0280.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308...   350   8e-98
gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286...    69   3e-13

>gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  350 bits (897), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 172/218 (78%), Positives = 192/218 (88%)

Query: 38  QSQPVGQVTHLSGVLSVRHADGTRMVLAVKSAILQGDTLITERETYARVKFLDNAEIVLR 97
           Q+Q VGQVTHLSGVL+ RHADGTR VL+VKSAILQGDTLITERETY RVKF+DNAEIVLR
Sbjct: 35  QAQVVGQVTHLSGVLTARHADGTRAVLSVKSAILQGDTLITERETYTRVKFVDNAEIVLR 94

Query: 98  PGTEVAVNKYIYDEKEPKNDSVAIGLVKGGLRAVTGLVGKRNHEAVSFDTPTATIGIRGT 157
           PGTEVAVNKYIYDEK+P+NDSVAIGLVKGGLRAVTGLVGKRNHEAV+FDTPTATIGIRGT
Sbjct: 95  PGTEVAVNKYIYDEKKPENDSVAIGLVKGGLRAVTGLVGKRNHEAVNFDTPTATIGIRGT 154

Query: 158 HFGALYCQNDCAGVPTPSGQPLANGLHVDVVTGAIQVTNPSGSQLYSAGQFGFVPSIGQP 217
           HFGAL+CQ DC G+PTPSGQ  A+GLHVDV +GAI V+N  G+QL++AGQFG+V    QP
Sbjct: 155 HFGALFCQADCGGIPTPSGQAPADGLHVDVASGAILVSNAGGAQLFNAGQFGYVSGPLQP 214

Query: 218 PVIVPPAQGVTVTMPTAISSNGNSGVQKIGAAKLDACV 255
           PV+VP   GV VTMP AISSN N+G+QK+GAA    CV
Sbjct: 215 PVVVPANIGVPVTMPPAISSNTNNGMQKLGAASAPDCV 252


>gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 64  LAVKSAILQGDTLITERETYARVKFLDNAEIVLRPGTEVAVNKYIYDEKEPKNDSVAIGL 123
           LAV   + +GD ++T   +       D+  I L P ++  + +++++EK  + + +A+ +
Sbjct: 65  LAVGERLYEGDRVLTAAASSVGFTLRDDTLISLGPNSQFLLEQFVFNEKTDEGN-IAVRM 123

Query: 124 VKGGLRAVTGLVGKRNHEAVSFDTPTATIGIRGTHF 159
           VKG LR V+GL+GK   E   F TPTATIGIRGT F
Sbjct: 124 VKGTLRYVSGLIGKHAPERQQFSTPTATIGIRGTDF 159


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 777,661
Number of extensions: 32790
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)