BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0279.p (1333 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Her... 937 0.0 gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer... 134 7e-32 >gi|300309649|ref|YP_003773741.1| hemagglutinin-like protein [Herbaspirillum seropedicae SmR1] Length = 1422 Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/1014 (57%), Positives = 718/1014 (70%), Gaps = 49/1014 (4%) Query: 1 MTSTSTPVQTPVQPAIALLPPSITVRVGKRKLTLSWRARKPLPVLLSRLLRRSWLRVLAP 60 MT+TS Q +PAI LLPPS+TVRVG+R+LTLSWRARKPLP LL+ LLRRSW R+LAP Sbjct: 1 MTTTSASAQGSSRPAIELLPPSLTVRVGRRRLTLSWRARKPLPQLLAGLLRRSWTRLLAP 60 Query: 61 CLRISVAAAAVCGAWQAPVLAAAPAPGALPTGWSVVNGNVSFNQNGNTLNINQLSPQAIA 120 LRISVA AAVCGAWQAPVLAAAPAPG LPTGWSVVNGNV+F QNGN LNINQLSPQAIA Sbjct: 61 ALRISVATAAVCGAWQAPVLAAAPAPGTLPTGWSVVNGNVTFIQNGNILNINQLSPQAIA 120 Query: 121 RFASFSIGSDAAVNVAQPSSTAALLAKVSGSDISQIYGKLSANGTVVLYNPNGVVIGPSG 180 +F SFSIG+DA VNV QPS+ AALLAKVSG DISQIYGKLSA GTVVLYNPNGVVIGPSG Sbjct: 121 QFLSFSIGADATVNVNQPSAAAALLAKVSGGDISQIYGKLSATGTVVLYNPNGVVIGPSG 180 Query: 181 TVDAGRFIATSLAISDSDFLAGKLNFAKDGSAGLVDNQGKINSATGGSVYLIGGSVSNSG 240 ++DAGRFIATSLAISDSDFLAGKLNFA+ G+AG+VDNQGKI SATGGSVYLIG SVSNSG Sbjct: 181 SIDAGRFIATSLAISDSDFLAGKLNFARQGNAGIVDNQGKIQSATGGSVYLIGSSVSNSG 240 Query: 241 IIASPQGEVILAAGQTVTLADTATPGVTVNVTGSAGNVTNLGTITAEAGRIGVAAGLITN 300 II S QGEVILAAG+TVTLADTATPGVTVNVTGSAGNVTNLG+ITAEAGRIGVAAGLI N Sbjct: 241 IIKSAQGEVILAAGETVTLADTATPGVTVNVTGSAGNVTNLGSITAEAGRIGVAAGLINN 300 Query: 301 SGVINASSVVREGGRIFLRAAGNLTTTANSSISADGTTGGNVTLYAQNKAFIDGDVSATG 360 SGVINASSVVREGGRIFLRA+ NLTT+A+SSI ADG+ GGN+ L AQ++AFIDGDVSATG Sbjct: 301 SGVINASSVVREGGRIFLRASQNLTTSASSSIHADGSRGGNIALVAQDQAFIDGDVSATG 360 Query: 361 APGKGGFVETSGLQQLDVVKVPKVGSGGTWLIDPSDLEVVPSGTLAGSQD-GDGAYAVTS 419 APG+GGFVETSGL++LDVVK P +G+GGTWLIDPSDLEVV G+ S G+G+YA+++ Sbjct: 361 APGQGGFVETSGLKRLDVVKAPTLGAGGTWLIDPSDLEVVSGGSRTVSTSTGNGSYAISA 420 Query: 420 SLGGSQISASTINSQLNNGTSVTLTTGSVGLQDGNITVSADISKTTGGNSTLTLQAGNNI 479 + SQI A TI QL G +VTL TG+ G Q GNITVS+ I K GG ++LTL A NNI Sbjct: 421 NGSSSQIGADTIVGQLEAGVNVTLATGADGSQAGNITVSSAIVKQAGGAASLTLNAANNI 480 Query: 480 SINANIISTSGQLNVNLKSGYSPLSMSLLSFVESESPSHFSTVGNGARVVLNGGSLTVND 539 SINA+I STSG L + L +G + F S + ST+GNGAR+ LNGG L D Sbjct: 481 SINADIRSTSGALTLTLHTGAG----EGVDF----SAARQSTIGNGARISLNGGDLYAMD 532 Query: 540 G-SNSGDLLISNGTVDL-GSGTLNARAVQLNSAGVLTLNGGQGSI---DSLNNSGTVNLA 594 G G+LLISNG+V L G+ TL A +QL+ G L G S+ D+L N+GT+ + Sbjct: 533 GVEGRGNLLISNGSVWLDGTSTLRAGRLQLDGGGSLVYASGNSSVTLNDALINNGTIQV- 591 Query: 595 SSSGNLSVGSGGITNNGTLNIS-CMSVTSSQGNMTNNGTLTLSNGASLSALNITNNANAT 653 ++SG L GG+ NNG L+++ S+ +S +++NNGT+TLSNG +L+ +ITNN NAT Sbjct: 592 NASGRL-YSDGGVYNNGNLSLADGTSLMASSTSLSNNGTVTLSNG-TLNFSSITNNQNAT 649 Query: 654 ISGNGTLSATNSGSIDNYGTLSPGGSGTVGTLTISGGKFEQHDSGKMLIDIGSNVSGGYD 713 I G+G+L A + N G L+PGG G +G LTI+ G + Q D+G MLID+ +G D Sbjct: 650 ILGSGSLVAAE--GVVNNGVLAPGGDGIIGNLTIA-GNYTQGDTGAMLIDV--TPAGSND 704 Query: 714 QITFVGNTSVTLNGTLQTHLLNNYT---SSSVLQPFGNKAVG---GYFRYVTGDVITVGG 767 + F G L G L+TH+L N + S PF ++ YFRYV+GDV + G Sbjct: 705 NVVFSG-AFAHLGGMLKTHVLGNVSEVAEGSNFMPFNFQSTSLGDSYFRYVSGDVSNIDG 763 Query: 768 AEQMVKASYGDGILGLSLRGAETFQASEAGD-WGSRYSWSSDGSSYLPTQIDHVVVGPSA 826 + M+KA+Y +G L L++ + TF AS + WG+R +WS GS+YLPT+ID VV+ + Sbjct: 764 IKTMLKANYTEGPLRLTMMRSTTFYASGSNSYWGARETWSGGGSTYLPTEIDTVVIDSNN 823 Query: 827 NLSHQSG-NDVVASLQVSSDGTLNLSGGNLTVRNTATINGTANVSGGTFIVNGNTSGSGT 885 ++ G D ++ LQV G N +GG LTV N A I+GT ++SGG+F NG+ S +G+ Sbjct: 824 TVTLSDGVGDKISRLQVKGSGQFNQTGGALTVVNGAVIDGTVDISGGSFTSNGSNSVTGS 883 Query: 886 ITIDSSSSQSCSDCPSQRLAGPVSPTTLGNV-----TLNNTAQSTL----TVQLNQGNLT 936 + + Q + LAG S + + TLN S L TV L+ G LT Sbjct: 884 VAL---GMQDGGVRGNATLAGWTSVRSGAQINVNGGTLNFNGTSNLLEGSTVDLSAGQLT 940 Query: 937 LGGNVHLA-RLTVSDGTVTGNTGSRLVADYFSQQGGNLSLA---DASFSLTCGT 986 G +LA +TV GT+T G ++ GN++L D + LT GT Sbjct: 941 FNGTSNLAGTVTVRGGTLT-TAGDTTLSGNMQVNSGNVTLGGVTDGTGRLTLGT 993 Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/493 (54%), Positives = 341/493 (69%), Gaps = 24/493 (4%) Query: 846 GTLNLSGGNLTVRNTATINGTANVSGGTFIVNGNTSGSGTITIDSSSSQSCSDCPSQRLA 905 GT+ + GG LT T++G V+ G + G T G+G +T+ ++ S +D +A Sbjct: 949 GTVTVRGGTLTTAGDTTLSGNMQVNSGNVTLGGVTDGTGRLTLGTAGSNEGNDDGGNLIA 1008 Query: 906 GPVSPTTLGNVTLNNTAQSTLTVQLNQGNLTLGGNVHLARLTVSDGTVTGNTGSRLV-AD 964 P P G+VT+ N + S+L V LN G+LTLGG+V LA L V+ G VTGN GSRLV A+ Sbjct: 1009 LP--PVGDGSVTIANASHSSLNVDLNSGDLTLGGDVRLAALNVTQGNVTGNIGSRLVVAE 1066 Query: 965 YFSQQGGNLSLADASFSLTCGTLAVGNITANNLELNA-SGELAQNDGTSLHVKSQLIAAA 1023 F Q GGNL+LADA+ S + G+L VGNITANNL L A S + Q G++LHVK QLI +A Sbjct: 1067 SFQQTGGNLTLADAALSQSNGSLIVGNITANNLVLEAQSANIFQQSGSALHVKQQLITSA 1126 Query: 1024 STGISLSNSGNQIAGFAANNSGTGDITLKNTLNTTDASAVSINGVSTATGNVSIDNTGGV 1083 + GISL+ +GNQIAGFAANN G+GDI L N LNT DAS V+INGV T G++ IDNTGG+ Sbjct: 1127 TDGISLTETGNQIAGFAANNQGSGDIRLINQLNTADASVVTINGVHTVHGDIHIDNTGGM 1186 Query: 1084 ITSAIGSKADFLGSLPLNSDGSTVSASSRLATLGI--NSTGQLKSANGSVSAVTHSPLTI 1141 T+A+G A FLG+LP +++G +++LA LG+ N+ GQ+K+ NG+V+ VTHSP+ I Sbjct: 1187 RTAALGDSASFLGALPSSAEGDPPGTAAKLAMLGMSSNTNGQVKTDNGAVTMVTHSPMAI 1246 Query: 1142 GAGGVSATGTITLTASASSGNNDTLIVNGVLVSTGGNITLSAGDTMTINANISTSPPGVA 1201 GAGGVSATG ITLTASAS+G+NDTL+VNGVLVS GGNI LSAGD+MTINANISTSPPGVA Sbjct: 1247 GAGGVSATGDITLTASASAGSNDTLVVNGVLVSLGGNIRLSAGDSMTINANISTSPPGVA 1306 Query: 1202 LFSVQSGQVIGYAQGVTIRDANGTRTPVTASTTNANSSSTSSSGVSNSNSSSTVVSAPSQ 1261 LFSV SG VIGYAQGV I DANGTR PV AS T +S+ G N+ +S V +Q Sbjct: 1307 LFSVDSGAVIGYAQGVRIVDANGTRIPVPASAT------SSAGGGGNTQTSQAVQQQQNQ 1360 Query: 1262 TTQIVQQQQNQQSQNLQTTVSKVQLSDTTGYQATTVIQQNNSSGQTTGGTSGNFGDE-GG 1320 +Q + Q TV+ +LSD +QQ++S GQT GGT+G+FGD+ GG Sbjct: 1361 QSQNL-----------QATVNSARLSDPNAQSTGNPVQQSSSGGQTVGGTAGSFGDDSGG 1409 Query: 1321 ERKQNKKPLPMCT 1333 + K +K LPMCT Sbjct: 1410 DSKAARKALPMCT 1422 >gi|300310333|ref|YP_003774425.1| filamentous hemagglutinin outer membrane protein [Herbaspirillum seropedicae SmR1] Length = 1568 Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 159/315 (50%), Gaps = 33/315 (10%) Query: 30 RKLTLSWRARKPLPVLLSRLLR----RSWLRVLAPCLRISVAAAAVCGAWQAPVLAAAPA 85 R L W V++S + R R+ +V+A L +S P+LA A Sbjct: 9 RIYRLVWSHVHQAWVVVSEVSRGQGKRANRKVIAAALLVS------------PLLAQAA- 55 Query: 86 PGALPTGWSVVNGNVSFNQNGNTLNINQLSPQAIARFASFSIGSDAAVNVAQPSSTAALL 145 P G V G S +Q+GNT I Q S + SF+ S VN QPS++A + Sbjct: 56 ----PVGGQVTAGAGSISQSGNTTTITQSSQNLSVNWQSFNTASHETVNFIQPSASAIAV 111 Query: 146 AKVSGSDISQIYGKLSANGTVVLYNPNGVVIGPSGTVDAGRFIATSLAISDSDFLAGKLN 205 ++ ++ ++ +G+L+ANG V L NPNGV+ G V+ G +A++L +SD+ A N Sbjct: 112 NRIYDTNPTRFFGQLNANGQVYLINPNGVLFGAGSQVNVGGLVASTLDMSDASLAAAARN 171 Query: 206 FAKDGSAGLVDNQGKINSATGGSVYLIGGSVSNSGIIASPQGEVILAAGQTVTLADTATP 265 F+ G+ ++ NQG I+ A GG V IG +VSN G I +P G V LAAG VTL Sbjct: 172 FSGSGTGSII-NQGDISVANGGYVAFIGNTVSNQGNITAPAGTVALAAGNDVTLTFANAS 230 Query: 266 GVTVNVTGSAGN--VTNLGTITAEAGRIGVAAG--------LITNSGVINASSVVREGGR 315 V + V + N N G I A+ G + ++AG ++ N+G+I A SV GR Sbjct: 231 LVKLQVNQNTLNNLSENGGLILADGGAVLMSAGAKDAVLASVVNNTGIIEARSVQNVNGR 290 Query: 316 IFLRAAGNLTTTANS 330 I L GNL T +NS Sbjct: 291 IVLD-GGNLATVSNS 304 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.307 0.125 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,493,655 Number of extensions: 142777 Number of successful extensions: 738 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 599 Number of HSP's successfully gapped: 19 Length of query: 1333 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1236 Effective length of database: 1,160,575 Effective search space: 1434470700 Effective search space used: 1434470700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 136 (57.0 bits)