BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0278.p
         (582 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309648|ref|YP_003773740.1| hemolysin activation/secretion ...   907   0.0  
gi|300310625|ref|YP_003774717.1| hemolysin activation translocat...    61   3e-10

>gi|300309648|ref|YP_003773740.1| hemolysin activation/secretion
           protein [Herbaspirillum seropedicae SmR1]
          Length = 569

 Score =  907 bits (2344), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/570 (78%), Positives = 500/570 (87%), Gaps = 11/570 (1%)

Query: 13  RGRAAKTMKRCVEHYGVAMALLGSAWGAIAQPVAAPVAAVMQQATAPLPEDERFDIRRFA 72
           +GR  K MKRC++HY +A ALLG+A           VAA  Q A A     ERF+IRRF 
Sbjct: 11  QGRGQKKMKRCLQHYVMAAALLGTA-----------VAAAAQSAPAAAEATERFEIRRFV 59

Query: 73  IEGNTLLSQTRLDEVVAPFTGTGRVYGDIQQALEAVENAYRSAGYTAVQVSVPEQELSQG 132
           + GNTLL Q ++   VAPF+G GRVYGDIQQALEA+EN YRSAGYTAVQV VPEQELS G
Sbjct: 60  VAGNTLLPQDQVQAAVAPFSGQGRVYGDIQQALEALENLYRSAGYTAVQVHVPEQELSSG 119

Query: 133 VVRLQVLETVVGKVVVSDNRYFSQENIRASIPGLREGSSPNLRSISEAVQLANDNPAKQV 192
            VR+ V+ETVVGKV VS+NR+FSQ NIRASIP L+EG  PNLR ISE+VQLANDNPAKQV
Sbjct: 120 EVRIDVVETVVGKVQVSENRHFSQANIRASIPALKEGVPPNLRRISESVQLANDNPAKQV 179

Query: 193 NVTLTASETTNQIDAAINVKDDKPLRVMLNLDNSGSADTGHWRTGVAVQHSNLFNRDHVA 252
           NVTL+A+++ +QIDA I VKDD PLRVMLNLDN+GSADTG WRTGVA+QHSNLFNRDHVA
Sbjct: 180 NVTLSAAQSGDQIDAKIEVKDDDPLRVMLNLDNTGSADTGRWRTGVAIQHSNLFNRDHVA 239

Query: 253 TVAYTTSPDSPSGAKVDLYSLGYRLPMYGLGDSLDFIYGKSNVSSGQTLALNSTLNITGR 312
           TVAYTTSPDSPSG+KVDLYSLGYRLP+Y LGDSLDFIYGKS+VSSGQTLALNSTLNITGR
Sbjct: 240 TVAYTTSPDSPSGSKVDLYSLGYRLPLYELGDSLDFIYGKSSVSSGQTLALNSTLNITGR 299

Query: 313 GEIYALRWNHFFARSGEWSSKLVFGADYKKVDSSCNISGGLLNGASLNTCLPYSTLPLSV 372
           GE+YALRWNHFFAR+GEWSSKLV GADYKKVDSSC I+GGLLNGA+LNTCLPYSTLPLS+
Sbjct: 300 GEVYALRWNHFFARNGEWSSKLVLGADYKKVDSSCAINGGLLNGATLNTCLPYSTLPLSL 359

Query: 373 SYSAQRQGVGQVLDYNLGMARNMATGQARSNDTLQVTDRYSLFTGSRKSMDNFIAIRGGA 432
           +YSAQRQGVG+V+D N+G+ARNMATGQAR ND LQVTDRYSLFT  R+SMDNFIA+RGGA
Sbjct: 360 TYSAQRQGVGEVIDANIGVARNMATGQARRNDALQVTDRYSLFTNGRQSMDNFIAVRGGA 419

Query: 433 SWLKAFESDWQVRLASLLQVSPHALPAVEQFGLAGANAVRGFTERAVAADSGVILNSEIY 492
           SWLKAF++DWQ+RLA  LQ+SPHALPAVEQFGLAGA AVRGFTERAV+ADSGV+LNSE+Y
Sbjct: 420 SWLKAFQNDWQMRLAGNLQLSPHALPAVEQFGLAGATAVRGFTERAVSADSGVVLNSELY 479

Query: 493 TPDLLVKSELRGNLRLLAFVDLGRGANNNVTAASTLPSTVTLASFGAGLRYILGRDVSLR 552
           TPDLL KSEL+G++RLLAFVD GRGANNNVTA S + ST+TLAS GAGLRY LGRD +LR
Sbjct: 480 TPDLLAKSELKGSMRLLAFVDAGRGANNNVTANSQVQSTLTLASIGAGLRYALGRDFNLR 539

Query: 553 LDVARVLLNGNSATEQRGDLNAHLSAILGF 582
           LDVARVLLNGNS TEQRGDLNAHLSA LGF
Sbjct: 540 LDVARVLLNGNSITEQRGDLNAHLSATLGF 569


>gi|300310625|ref|YP_003774717.1| hemolysin activation translocator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 581

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 101/213 (47%), Gaps = 11/213 (5%)

Query: 53  MQQATAPLPEDERFDIRR---FAIEGNTL-LSQTRLDEVVAPFTGTGRVYGDIQQALEAV 108
           +Q+ T   PE     +RR   FA++ +     QT L    A + G+      I+  L  V
Sbjct: 83  VQRVTLAFPEQVSEAVRRTGGFALQMDPFHFIQTYL----AGYAGSCLGQQGIETILRRV 138

Query: 109 ENAYRSAGYTAVQVSVPEQELSQGVVRLQVLETVVGKVVVSDNRYFSQENIRASIPGLRE 168
                  GY+  +V + +Q+LS G + + ++  ++  +   D    +  + R++ P  + 
Sbjct: 139 TGQILERGYSTTRVGIGQQDLSTGQLSITLVPGIIHAIRFKDPAITA--SYRSAFP-TQA 195

Query: 169 GSSPNLRSISEAVQLANDNPAKQVNVTLTASETTNQIDAAINVKDDKPLRVMLNLDNSGS 228
           G+  NLR + + ++      ++ V++ +  ++   Q D  + VK  KP ++ L+LD+SG+
Sbjct: 196 GALLNLRDLEQGLEQMKRVASQDVDMQILPTDVPGQSDVVLEVKRIKPWKLTLSLDDSGA 255

Query: 229 ADTGHWRTGVAVQHSNLFNRDHVATVAYTTSPD 261
             TG ++ G+ +   +L   + +    +++  D
Sbjct: 256 KSTGKYQAGINLAIDDLLGINDLFNAGFSSDAD 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,658,855
Number of extensions: 68757
Number of successful extensions: 265
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 4
Length of query: 582
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 492
Effective length of database: 1,193,720
Effective search space: 587310240
Effective search space used: 587310240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)