BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0277.p
         (757 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirill...  1232   0.0  

>gi|300309643|ref|YP_003773735.1| adenylate cyclase [Herbaspirillum
           seropedicae SmR1]
          Length = 757

 Score = 1232 bits (3188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/757 (84%), Positives = 686/757 (90%)

Query: 1   MLRRLRTAFGKYWARWLLALVLAGMAEAVVMNVLPNRLVERLDLFFYDLRMRVTKPYLDP 60
           MLRRLRTAF  YWARWLLALVL G+A A VM +LPNRLVER+DLFFYDLRMRV +P LDP
Sbjct: 1   MLRRLRTAFATYWARWLLALVLTGLATAQVMALLPNRLVERMDLFFYDLRMRVAQPDLDP 60

Query: 61  RIVIIDIDEKSIAELGRWPWSRDVVAQLVKQMTQTYQAQSVGFDVVFAEPDNTSGYGRLE 120
           RIVI+DIDEKSIAELGRWPWSRDV+AQLV+QMTQTYQAQSVGFDVVFAEPD +SGYGRL 
Sbjct: 61  RIVIVDIDEKSIAELGRWPWSRDVIAQLVRQMTQTYQAQSVGFDVVFAEPDTSSGYGRLA 120

Query: 121 DLARGPLKDVPQLAQQLRLLKPQMDYDARLAAALQGQPVVMGYAFSSEPGAVTKGQLPPP 180
            LA GPLKDVPQ A+QL+ LKPQMDYDARLA AL+GQPVVMGY  S+E GA+ KGQLPPP
Sbjct: 121 QLADGPLKDVPQFARQLQALKPQMDYDARLAEALRGQPVVMGYNLSNEAGAIAKGQLPPP 180

Query: 181 AFSLADLGGRDLDVIGWRAYGANLPQLQAAARAGGFFNQVPGDDGLVRAVPLIARYGNQF 240
           AFS+ADLGGR LDV  WRAYGANLPQLQAAARAGGFFN VP DDGL+RAVPL+A+ G  F
Sbjct: 181 AFSVADLGGRALDVTHWRAYGANLPQLQAAARAGGFFNPVPDDDGLIRAVPLMAQVGEHF 240

Query: 241 YESLALATARVAVDGKRIKPVFLTTADGLMESQKYDYGALAGIAVQARPQPLFIPVERGL 300
           YESLALATARVA+DG+RIKP+FL   D L E Q  DYGALAGIAV+ RPQPLFIPVER L
Sbjct: 241 YESLALATARVALDGRRIKPIFLQRQDVLFEGQLRDYGALAGIAVETRPQPLFIPVERHL 300

Query: 301 TTLVTYRGPGGPNGGAFRYVPAVDVIRGTYPHEQLDGRIMLVGTTVPGLNDLRATPVNAI 360
           TTLV+YRG GGPNGGAFRYVPAVDVIRGTYPH QLDGRIMLVGTTVPGLNDLRATPVN +
Sbjct: 301 TTLVSYRGKGGPNGGAFRYVPAVDVIRGTYPHAQLDGRIMLVGTTVPGLNDLRATPVNPV 360

Query: 361 YPGVEIHANLIASILDDDFKSRPDFAQGYDALQVALVGMLLGLLLPMLGPLASMLLALSS 420
           YPGVEIHANLIASI+D DFK+RPDFA GYD LQV  VG+LLGLLLPMLGPL S++L L++
Sbjct: 361 YPGVEIHANLIASIIDGDFKARPDFAVGYDLLQVLAVGVLLGLLLPMLGPLWSIVLTLAT 420

Query: 421 AAALGGLNLWLYNGAGMVLPLATSILLVLLLFISNLAWGYLFEYRNRKAIVNLFGEYVAP 480
           AA LGGLN WLY+ AGMVLPLAT++LLV  LFI NL WGYLFEYRNRKAIVNLFGEYVAP
Sbjct: 421 AAGLGGLNFWLYDSAGMVLPLATALLLVASLFICNLGWGYLFEYRNRKAIVNLFGEYVAP 480

Query: 481 ELVAEMAANPASYNMEGEIRELSVMFSDVRGFTTISESLQPNELREYINVYLTAMSEDIR 540
           ELVAEMAANPASYNMEGEIREL+VMFSDVRGFTTISESLQPNELREYINVYLTAMSEDIR
Sbjct: 481 ELVAEMAANPASYNMEGEIRELTVMFSDVRGFTTISESLQPNELREYINVYLTAMSEDIR 540

Query: 541 GNRGTLDKYIGDAVMAFWGAPLDVPDHAARAVATALKMQQTTLQLNQEFTRRNWPPLKIG 600
           GNRGTLDKYIGDAVMAFWGAPL +PDHAARAVATALKMQQT L LN+EF RRNWPPLKIG
Sbjct: 541 GNRGTLDKYIGDAVMAFWGAPLALPDHAARAVATALKMQQTALALNEEFARRNWPPLKIG 600

Query: 601 IGINSGQMRVGDMGSKIRRAYTVMGDAVNLSSRLEAITKVYGVGVLVGQATRLAAPQFAY 660
           IG+N+GQMRVGDMGS+IR+AYTVMGDAVNLSSRLE+ITKVYGVGVLVG ATR AAPQFAY
Sbjct: 601 IGLNTGQMRVGDMGSRIRKAYTVMGDAVNLSSRLESITKVYGVGVLVGAATREAAPQFAY 660

Query: 661 RELDRVRVKGKNEPVPIYEPLALDTELDVATRAEVEQWHEALALVRAQRWDEAQAALQAL 720
           RELDRVRVKGK+EPVPIYEPLAL+ ELD   R EV QWH ALALVRAQ+WD AQAAL AL
Sbjct: 661 RELDRVRVKGKHEPVPIYEPLALEQELDAGLREEVAQWHAALALVRAQQWDAAQAALHAL 720

Query: 721 QAVQARGLYTLYLERIAHYREAPPPADWDGVTTFETK 757
           QA QARGLY LYLERIAHYRE+PPPADWDGVTTFETK
Sbjct: 721 QAAQARGLYALYLERIAHYRESPPPADWDGVTTFETK 757


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,251,430
Number of extensions: 97853
Number of successful extensions: 309
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 1
Length of query: 757
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 665
Effective length of database: 1,184,250
Effective search space: 787526250
Effective search space used: 787526250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)