BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0273.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309636|ref|YP_003773728.1| hypothetical protein Hsero_0294...   313   7e-87

>gi|300309636|ref|YP_003773728.1| hypothetical protein Hsero_0294
           [Herbaspirillum seropedicae SmR1]
          Length = 192

 Score =  313 bits (802), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 156/175 (89%), Positives = 161/175 (92%)

Query: 1   MHASPASRSSLRIHLAAIAGTALCYFLFYTINEWLFRRTQFTEGIAWIYLPAGVRLICTL 60
           M AS   RS+LR HLAA AGTALCYFLFY+INEWLFRRTQFTEGIAWIYLPAGVRLICTL
Sbjct: 1   MQASSEFRSALRTHLAAAAGTALCYFLFYSINEWLFRRTQFTEGIAWIYLPAGVRLICTL 60

Query: 61  LFAEAGCVGLLIGSLATAATYQLFPQDLVAAAGYCLISAGAPYLAYRLTLSGMDLGRNLG 120
           LFAEAGCVGLLIGSLATAATY LFP D +A AGYCLISAGAPYLAYRLTLSG+DLGRNL 
Sbjct: 61  LFAEAGCVGLLIGSLATAATYHLFPHDPIAVAGYCLISAGAPYLAYRLTLSGLDLGRNLS 120

Query: 121 NLTTTRLMACILLYALSNPLFQLIWFVMRGVYPDFWSGLIVMSIGDLLGSLMVVY 175
           NL TTRLMACILLYALSNPL QLIWFVMRGVYPDFWSGLIVMSIGDL GSL+VVY
Sbjct: 121 NLNTTRLMACILLYALSNPLLQLIWFVMRGVYPDFWSGLIVMSIGDLSGSLIVVY 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.143    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 563,841
Number of extensions: 22257
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)