BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0269.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309632|ref|YP_003773724.1| MotA/TolQ/ExbB proton channel f...   367   e-103
gi|300310500|ref|YP_003774592.1| biopolymer transport ExbB-like ...    56   2e-09

>gi|300309632|ref|YP_003773724.1| MotA/TolQ/ExbB proton channel
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  367 bits (943), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/217 (91%), Positives = 200/217 (92%), Gaps = 9/217 (4%)

Query: 1   MNMNLLHELAFYLMYACAALAIFVIVERGLFFGYTMRQASGLERAMTHAVQHLKELPTEL 60
           MNM LLHELAFYLMYACAALAIFVIVERGLFFGYTMRQA+GLERAMTHAVQHLKELP  L
Sbjct: 1   MNMQLLHELAFYLMYACAALAIFVIVERGLFFGYTMRQATGLERAMTHAVQHLKELPAAL 60

Query: 61  TTRPSLPLALVSDILAEKHHLHTEKDLEDFSESVYIAKRGEVQQRLWILDTIVTAAPLLG 120
           T RPSLPLALVSDILAEKHHL TEKDLEDFSESVYIAKRGEVQQRLWILDTIVTAAPLLG
Sbjct: 61  TARPSLPLALVSDILAEKHHLTTEKDLEDFSESVYIAKRGEVQQRLWILDTIVTAAPLLG 120

Query: 121 LLGTILGIIDTFKALAVQGVSDPGQVSQGIGTALYATALGIGIAVVGMFFFNLFQERIER 180
           LLGTILGIIDTFKALAV GVSDPGQVSQGIGTALYATALGIGIAVVGMFFFNLFQERIER
Sbjct: 121 LLGTILGIIDTFKALAVSGVSDPGQVSQGIGTALYATALGIGIAVVGMFFFNLFQERIER 180

Query: 181 INDHLKVLMLRACVGRQNLQPGQPQPTSQSNNKLHVA 217
           INDHLKVLMLRACVGR N     PQP S    KLH+A
Sbjct: 181 INDHLKVLMLRACVGRVN-----PQPQS----KLHIA 208


>gi|300310500|ref|YP_003774592.1| biopolymer transport ExbB-like
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 101 EVQQRLWILDTIVTAAPLLGLLGTILGIIDTFKALAVQGVSDPGQVSQGIGTALYATALG 160
            +++ L  L TI + APL+GL GT++G+I+ F +    G ++P Q++ GI  ALY T  G
Sbjct: 102 RLERFLTTLGTIASLAPLMGLFGTVVGMIEIFASQNAAG-TNPAQLAHGISIALYNTGFG 160

Query: 161 IGIAVVGMFFFNLFQERIE 179
           + IA+  + F+  F+  ++
Sbjct: 161 LAIAMPALVFYRHFRALVD 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 621,464
Number of extensions: 22756
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 2
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)