BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0267.p
         (220 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309630|ref|YP_003773722.1| hypothetical protein Hsero_0288...   380   e-107

>gi|300309630|ref|YP_003773722.1| hypothetical protein Hsero_0288
           [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score =  380 bits (977), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/218 (85%), Positives = 201/218 (92%), Gaps = 1/218 (0%)

Query: 4   MTSRSRKKK-PTRPDHALLLSQLQQVAQGLGETFAPFCEVVLHDLRDADHSIVALHNNLS 62
           M SR RKK+ P RPDHALLLSQLQQ+AQGLG+TFAPFCEVVLHDLR ADHS+VAL+NNLS
Sbjct: 1   MKSRPRKKRVPDRPDHALLLSQLQQIAQGLGDTFAPFCEVVLHDLRHADHSVVALYNNLS 60

Query: 63  GREVGDATTELGLARIADESYPQVLTNYANTLPDGRQAKSTSIGIKDADGKYVAALCMNI 122
           GREVGD TTELGLARIADESYPQVL+NYANTLPDGRQ KSTSIGIKD DGKYVAALC+NI
Sbjct: 61  GREVGDPTTELGLARIADESYPQVLSNYANTLPDGRQTKSTSIGIKDVDGKYVAALCLNI 120

Query: 123 DLTLFGALQGMLRQFGCIDGAQRVAETLEPAGADALRSRIDAFAARLSTTPRSLKAEDRR 182
           DLTLFGALQGML QFG  DGA RVAE+LEPAGADALR+ IDAFAARLSTTPRSLK E+RR
Sbjct: 121 DLTLFGALQGMLNQFGHTDGAVRVAESLEPAGADALRNHIDAFAARLSTTPRSLKTEERR 180

Query: 183 QLMRQLRQAGCMDVRRAAEIVAAHLGVSRATVYNDEKD 220
            LMR+LRQ G +DVRRAAEIVAAHLGVSRATVYND+K+
Sbjct: 181 ALMRELRQNGGLDVRRAAEIVAAHLGVSRATVYNDDKE 218


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 613,510
Number of extensions: 23453
Number of successful extensions: 102
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,231,600
Effective search space: 169960800
Effective search space used: 169960800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)