BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0262.p
         (405 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309620|ref|YP_003773712.1| major facilitator superfamily p...   570   e-164
gi|300309773|ref|YP_003773865.1| major facilitator superfamily p...   220   2e-58

>gi|300309620|ref|YP_003773712.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 405

 Score =  570 bits (1468), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 325/405 (80%), Positives = 357/405 (88%)

Query: 1   MNIRPADKPASVTPLASPGTAVFLKLAPLTLAVFIAFLTIGLQLPVLPLHLKDALGMNAT 60
           M+    DKPA VTPLASPG AVF KLAP+TLAVFIAFLTIGLQLPVLPLHLKDALGMNAT
Sbjct: 1   MSASSTDKPARVTPLASPGVAVFFKLAPITLAVFIAFLTIGLQLPVLPLHLKDALGMNAT 60

Query: 61  VVGVVVGAQFAAALLSRSWAGNYADLRGAKRAVLGGFTAASLSGLVYLASLAWLDHPVAS 120
           VVGVVVGAQFAAALLSR+WAGN+ADLRGAKRAV+ GF  A+LSGLVYLASLA L  P  S
Sbjct: 61  VVGVVVGAQFAAALLSRAWAGNFADLRGAKRAVMAGFITAALSGLVYLASLALLGRPDWS 120

Query: 121 VLVLLLGRLLLALGESLVVTGTMSWGIALVGPQHGGKVMAWLGIAIYAAMACGAPLGVAV 180
           V VLLLGR++LALGESL+VTG MSWGI LVGPQHGGKVMAWLGIA+YAA   GAPLGVA+
Sbjct: 121 VAVLLLGRVVLALGESLMVTGAMSWGIGLVGPQHGGKVMAWLGIALYAAFGAGAPLGVAI 180

Query: 181 NHAYGFAGIAGVSVLIPLLALLMLAGLPAVAPSANRRTPFYKVLGAVWQPGLGLALSSVG 240
           N  YGFAGI+  SV + L ALL++A L A+APSA+RRTPFY+VLGAVW+PGLGLA SSVG
Sbjct: 181 NQIYGFAGISLASVGLSLAALLLIAPLRAIAPSAHRRTPFYQVLGAVWRPGLGLAFSSVG 240

Query: 241 FGVITAFIALLFAAHAWGDSSLAFTSFGIAFIVARLLFAHLPDKVGGARVALVCVVIEVL 300
           FGVITAFIALLFAA AWG+++LAF++FG AFI+ARLLFAHLPDK+GGARVALVCV+IE  
Sbjct: 241 FGVITAFIALLFAARAWGNAALAFSAFGAAFILARLLFAHLPDKLGGARVALVCVLIEAA 300

Query: 301 GQLLIWQAGSASWAYAGAALTGFGYSLVFPGFGVEAMRRAPPQTRGLAMGAYVAFLDISL 360
           GQLLIWQA +A WAY GAALTGFGYSL FPGFGVEAMRRAPPQTRGLAMGAYVAFLD+SL
Sbjct: 301 GQLLIWQADAAHWAYLGAALTGFGYSLAFPGFGVEAMRRAPPQTRGLAMGAYVAFLDLSL 360

Query: 361 GITSPLAGALASHYGVSSVYLAGAVVVGLSMLVALGLLRPMKNGH 405
           GITSPLAG LASH GV S+YLAGAV VGLS+LVAL LL  +K G 
Sbjct: 361 GITSPLAGVLASHAGVQSIYLAGAVTVGLSVLVALSLLHSVKMGD 405


>gi|300309773|ref|YP_003773865.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  220 bits (560), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/399 (38%), Positives = 223/399 (55%), Gaps = 5/399 (1%)

Query: 5   PADKPASVTPLASPGTAVFLKLAPLTLAVFIAFLTIGLQLPVLPLHLKDALGMNATVVGV 64
           PA  P  +TP       V  ++       F+ +L IG+ + VLP ++   LG ++ + G+
Sbjct: 16  PAAPPRPLTP-----AKVTRQIIATAFFTFLVYLAIGIPMAVLPGYIHLDLGYSSVMAGL 70

Query: 65  VVGAQFAAALLSRSWAGNYADLRGAKRAVLGGFTAASLSGLVYLASLAWLDHPVASVLVL 124
            +  Q+ A  +SR+ AG   D  GAK+ V+ G    S SG + L S      P  S+++L
Sbjct: 71  GISVQYFATFVSRANAGRMIDTVGAKQTVMRGMLLCSASGALLLCSALAQPLPFLSLVLL 130

Query: 125 LLGRLLLALGESLVVTGTMSWGIALVGPQHGGKVMAWLGIAIYAAMACGAPLGVAVNHAY 184
              R LL LGESLV TG + WG+  VG ++  K+++W GIA YAA+A GAPLGV ++ + 
Sbjct: 131 FASRALLGLGESLVGTGAIMWGVGRVGSENTAKMISWNGIATYAALAIGAPLGVVLDRSL 190

Query: 185 GFAGIAGVSVLIPLLALLMLAGLPAVAPSANRRTPFYKVLGAVWQPGLGLALSSVGFGVI 244
           GFA I    +L+  L  ++  G P        +  F  VL  V+  G+GLA  ++GFG I
Sbjct: 191 GFAMIGLSGMLLTALGYVLARGGPVTPVVQGEQLSFKLVLRKVFAYGMGLAFGTIGFGSI 250

Query: 245 TAFIALLFAAHAWGDSSLAFTSFGIAFIVARLLFAHLPDKVGGARVALVCVVIEVLGQLL 304
             FI L +A   W  ++ A T+F  AF+ ARLLFA+   + GG RVA+V  + E +G LL
Sbjct: 251 ATFITLYYADLHWSGAAFALTAFSSAFVGARLLFANAITRFGGYRVAVVSFLTEAVGLLL 310

Query: 305 IWQAGSASWAYAGAALTGFGYSLVFPGFGVEAMRRAPPQTRGLAMGAYVAFLDISLGITS 364
           +W   +   A  GA L GFG++LVFP  GVEA+    P  RG A+ AY  FLD++LGIT 
Sbjct: 311 LWSTTTPELALLGAGLAGFGFALVFPSLGVEAVNLVSPANRGAALAAYSVFLDLALGITG 370

Query: 365 PLAGALASHYGVSSVYLAGAVVVGLSMLVALGLLRPMKN 403
           PLAGA+A   G   V+L  A+    ++ ++L L R  + 
Sbjct: 371 PLAGAIAGQLGYPQVFLFAAIAAIGAVALSLSLYRSAQQ 409


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,212,157
Number of extensions: 47183
Number of successful extensions: 417
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 3
Length of query: 405
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,207,925
Effective search space: 384120150
Effective search space used: 384120150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)