BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0258.p
         (657 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309615|ref|YP_003773707.1| beta-galactosidase [Herbaspiril...  1227   0.0  

>gi|300309615|ref|YP_003773707.1| beta-galactosidase [Herbaspirillum
           seropedicae SmR1]
          Length = 658

 Score = 1227 bits (3174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 590/656 (89%), Positives = 622/656 (94%)

Query: 1   MSLRLGVCYYPEHWPEAMWDSDAQRMKALGIQQVRIGEFAWSRIEPSPGDLRWDWLDRAI 60
           MSLRLGVCYYPEHWPEAMWDSDAQRMKALGI+QVRIGEFAWSRIEPSPG+LRWDWLDRAI
Sbjct: 1   MSLRLGVCYYPEHWPEAMWDSDAQRMKALGIKQVRIGEFAWSRIEPSPGELRWDWLDRAI 60

Query: 61  EVLAKHGLEVVMCTPTATPPKWLIDRHDDVLAVDANGRQRGFGSRRHYDFSSDSYYEESQ 120
           EVLA+HGLEVVMCTPTATPPKWLIDRHDDVLAVDANGRQR FGSRRHYDFSSDSY+EESQ
Sbjct: 61  EVLARHGLEVVMCTPTATPPKWLIDRHDDVLAVDANGRQRAFGSRRHYDFSSDSYFEESQ 120

Query: 121 RIVRLLGERYGQHPAVTAWQLDNEYGCHQTVVSYSSSAQRRFRQWLRQRYGSIDALNTAW 180
           RIVRLLGERYGQHPAVTAWQ DNEYGCHQTVVSYS+SAQRRFRQWLRQRYGSIDALNTAW
Sbjct: 121 RIVRLLGERYGQHPAVTAWQTDNEYGCHQTVVSYSASAQRRFRQWLRQRYGSIDALNTAW 180

Query: 181 GTVFWSMEYRSFDEIDAPIGTVTEAHPSHRLDYRRFASDEVVRYNQMQVEILRPLSPGRL 240
           GTVFWSMEYRSFDEIDAPIGTVTEAHPSHRLDYRRFASDEV RYN+MQVEILR LSPGRL
Sbjct: 181 GTVFWSMEYRSFDEIDAPIGTVTEAHPSHRLDYRRFASDEVARYNRMQVEILRALSPGRL 240

Query: 241 MVHNFMQMFLEFDHYPVAADLDVATWDSYPLGALEVMWFDPHTKARWLRTGHPDFASFNH 300
           MVHNFMQMFLEFDHYPVAADLDVATWDSYPLGALEVMWFD  TKARWLRTGHPDFASFNH
Sbjct: 241 MVHNFMQMFLEFDHYPVAADLDVATWDSYPLGALEVMWFDDATKARWLRTGHPDFASFNH 300

Query: 301 DLYRGMSAKPFWVMEQQPGPVNWAHWNPAPLPGMVRLWSWEAFAHGAGCVSYFRWRQCPF 360
           DLYRGMSA+PFWVMEQQPGPVNWAHWNP PLPGMVRLWSWEAFAHGAGCVSYFRWRQCPF
Sbjct: 301 DLYRGMSAQPFWVMEQQPGPVNWAHWNPHPLPGMVRLWSWEAFAHGAGCVSYFRWRQCPF 360

Query: 361 AQEQLHAGLNRPDNRLDVGGSEAERVAQEIISVQAAHGELSQPRGKVALLFDYDAKWLFE 420
           AQEQLHAGLNRPDNRLDVGGSEAE+VA+EII+V+ A G L+QPRGKVALLFDYDAKWLF+
Sbjct: 361 AQEQLHAGLNRPDNRLDVGGSEAEQVAREIITVEQAQGALAQPRGKVALLFDYDAKWLFD 420

Query: 421 IHFQGIDFEYAHFAFDYYSTLRALGLDVDIVPLNADLQGYAMIVVPPLPIVPDDLPARIA 480
           IHFQGIDFEY  FAF YY+TLRALGLDVDI+PL+A L GYAMIVVPPLPIVPDDLP RIA
Sbjct: 421 IHFQGIDFEYQRFAFQYYATLRALGLDVDILPLHAKLDGYAMIVVPPLPIVPDDLPGRIA 480

Query: 481 QSGAQVVFGPRSGSKTKSLQIPSTLPPGPLQQLLPMRVWRVESMRPNVSEAVQFGTVPGQ 540
           +SGA  VFGPRSGSKT+SLQIP+TLPPGPLQQLLPMRVWRVES+RPNV+E VQFG   GQ
Sbjct: 481 ESGALSVFGPRSGSKTRSLQIPATLPPGPLQQLLPMRVWRVESLRPNVTEPVQFGAHSGQ 540

Query: 541 ARYWRDLIEADGEGLQTIARFGDGHPAIVQKERAHYLAGIFDAELTSRYFEQVARAAGLT 600
             +WRDLIEADGEGLQT+A+FGDGHPAIV+KERAHYLAGIFD  LTS  FEQ+AR AGL 
Sbjct: 541 GAHWRDLIEADGEGLQTLAQFGDGHPAIVRKERAHYLAGIFDDALTSACFEQLARDAGLA 600

Query: 601 PQRLPEGLRLQQRGGLQFAFNYSDAPITLPRSEGAQFLVGQAALEPQGVAIYRSQQ 656
           PQRLPEGLRLQ+RGGL FAFNYSDA ITLP+++GAQFLVGQA LEPQGVA+YR+ Q
Sbjct: 601 PQRLPEGLRLQERGGLCFAFNYSDAAITLPQAQGAQFLVGQAQLEPQGVAVYRTGQ 656


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,212,851
Number of extensions: 96518
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 566
Effective length of database: 1,188,985
Effective search space: 672965510
Effective search space used: 672965510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)