BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0253.p (1047 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein... 1977 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 228 2e-60 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 220 5e-58 gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump pr... 212 1e-55 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 182 9e-47 >gi|300309610|ref|YP_003773702.1| cation/multidrug efflux protein [Herbaspirillum seropedicae SmR1] Length = 1047 Score = 1977 bits (5123), Expect = 0.0, Method: Compositional matrix adjust. Identities = 996/1047 (95%), Positives = 1025/1047 (97%) Query: 1 MSAPGRFNLSAWTLKHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA 60 MSAPGRFNLSAWTL+HQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA Sbjct: 1 MSAPGRFNLSAWTLQHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGA 60 Query: 61 TARQVQEQITDRIARKLQETPDVDFLRSYSRPGQSQLFFTIKDTAPASQVPQTWYQVRKK 120 TARQVQEQITDRIARKLQETPDVDFLRSYSR GQSQLFFTIKDTAPASQVPQTWYQVRKK Sbjct: 61 TARQVQEQITDRIARKLQETPDVDFLRSYSRAGQSQLFFTIKDTAPASQVPQTWYQVRKK 120 Query: 121 VGDMAATLPQGVKGPYFNDEFGDVYTNIYALAGDGFTPAQLRDYADQLRAELLHVPGVAK 180 VGDMAATLPQGVKGPYFNDEFGDVYTNIYALAGDGF+PAQLRDYADQLR ELLHVPGVAK Sbjct: 121 VGDMAATLPQGVKGPYFNDEFGDVYTNIYALAGDGFSPAQLRDYADQLRGELLHVPGVAK 180 Query: 181 IDYFGDRQEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGSDRVYVRPTGQ 240 IDYFG+R EHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTG+DRVYVRPTGQ Sbjct: 181 IDYFGERNEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGNDRVYVRPTGQ 240 Query: 241 FENLRALEEKIIHINNHNFRLGDIATIHRGYDEPQEQEMRANGQPVLGIGVTMQPGGDVI 300 F+NLRALEEKII INN +FRLGDIATI RGYDEPQEQ MRANGQPVLGIGVTMQPGGDVI Sbjct: 241 FDNLRALEEKIIQINNRSFRLGDIATITRGYDEPQEQAMRANGQPVLGIGVTMQPGGDVI 300 Query: 301 RLGKALDERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDEFLEAVAEAVAIVLVVSLLSLG 360 RLGKALD RTE+LRKRLPAGLTLTAVSSMPHAVEKSVD+FLEAVAEAVAIVLVVSL+SLG Sbjct: 301 RLGKALDARTEELRKRLPAGLTLTAVSSMPHAVEKSVDDFLEAVAEAVAIVLVVSLVSLG 360 Query: 361 IRTGMVVVISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE 420 IRTGMVVVISIPIVLAVT+LFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE Sbjct: 361 IRTGMVVVISIPIVLAVTSLFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVKLE 420 Query: 421 QGWNRHRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW 480 QGWNR RAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW Sbjct: 421 QGWNRRRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSW 480 Query: 481 LAAVVLIPLLGYHMLKEKPGALSDEQIAAQPHAGHDEEDHDHPIYQTRVYTLLRRAVAWC 540 LAAVVLIPLLGYHMLKEKPGAL+DEQIAA PHAGHDEEDHDHPIYQTR+YT LRR+VAWC Sbjct: 481 LAAVVLIPLLGYHMLKEKPGALTDEQIAANPHAGHDEEDHDHPIYQTRIYTWLRRSVAWC 540 Query: 541 VAFRGRVVILTTVLFIGSLAAFALVPQQFFPSSDRPELLIDLRLPERASFEATQRETIRM 600 VAFRGRVVI TTVLFIGSLAAFALVPQQFFPSSDRPELLIDL LPERASFEATQRE +RM Sbjct: 541 VAFRGRVVIATTVLFIGSLAAFALVPQQFFPSSDRPELLIDLHLPERASFEATQREAVRM 600 Query: 601 EALLKGRPQIDHYVSFVGVGAPRFYLPLDQQLASANFAQFVVTAKSVEDREALARALEEP 660 EALLK RPQIDHYVSFVGVGAPRFYLPLDQQLAS NFAQFVVTAKSVEDREALARALEEP Sbjct: 601 EALLKDRPQIDHYVSFVGVGAPRFYLPLDQQLASPNFAQFVVTAKSVEDREALARALEEP 660 Query: 661 LRKQFSGARTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAELRKESRATNIQFD 720 LR+QFSG RTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAE+RKESRATNIQFD Sbjct: 661 LRRQFSGVRTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAAEMRKESRATNIQFD 720 Query: 721 WDEPAQRSVSFEIDQKRAAELGLSSQQISNFLAMQLSGFTVTQYRERDKLISVDLRAPRS 780 WDEPAQRSVSFEIDQKRAA+LGL+SQQISNFLAMQLSG+T+TQYRERDKLISVDLRAPRS Sbjct: 721 WDEPAQRSVSFEIDQKRAAQLGLTSQQISNFLAMQLSGYTITQYRERDKLISVDLRAPRS 780 Query: 781 ERVDPARLATLSMPTTHGPVPLATLGRFHDTLEYGVIWERDRQPTITVLADVRPGVQGID 840 ERVDPARLATLSMPT +GPVPLATLG+F++TLEYGVIWER+RQPTITVLADVRPGVQGID Sbjct: 781 ERVDPARLATLSMPTANGPVPLATLGQFNNTLEYGVIWERNRQPTITVLADVRPGVQGID 840 Query: 841 VTNAVNQKLDALRSELPVGYRINVGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSF 900 VTN VNQKL+ALR+ELPVGYRI+VGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSF Sbjct: 841 VTNDVNQKLNALRAELPVGYRIDVGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSF 900 Query: 901 GRTLMVVMTAPLGLIGVVAALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA 960 GRT+MVVMTAPLGLIGVV ALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA Sbjct: 901 GRTMMVVMTAPLGLIGVVGALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAA 960 Query: 961 GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY 1020 GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY Sbjct: 961 GRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITIATILTLFY 1020 Query: 1021 LPALYALCYRVKPDETHHRDAVAQGSH 1047 LPALYALCYRVKPDETHHRD AQGSH Sbjct: 1021 LPALYALCYRVKPDETHHRDTAAQGSH 1047 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 261/1048 (24%), Positives = 452/1048 (43%), Gaps = 74/1048 (7%) Query: 19 LVTFILAL-VTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKL 77 + +++AL + L G+ + S+L + P + I +PGAT + + + + I R+L Sbjct: 10 IFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDGVISLIEREL 69 Query: 78 QETPDVDFLRSYS-RPGQSQLFFTIKDTAPASQVPQTWYQVRKKVGDMAATLPQGVK--G 134 ++ + S + G +Q+ T K P + V+ K+ + A LPQ V+ G Sbjct: 70 SGVKNLLYFESSADTSGTAQISVTFK---PGTDPELAQVDVQNKLKAIEARLPQTVRQNG 126 Query: 135 PYFNDEFGDVYTNIYALAGDG-FTPAQLRDY-ADQLRAELLHVPGVAKIDYFGDRQE-HI 191 + + DG + +L DY A + EL + GV ++ FG Q I Sbjct: 127 VTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGAEQAMRI 186 Query: 192 YIDIGNARMTRLGISPQQLADAIGGQNA-VVPGGLITTGSDR-----VYVRPTGQFENLR 245 ++D ++ G++ ++ AI QNA + PG L + R + + GQ ++ Sbjct: 187 WLD--PFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQLQSPA 244 Query: 246 ALEEKIIHINNHNFR--LGDIATIHRGYDEPQEQEMRANGQPVLGIGVTMQPGGDVIRLG 303 ++ R LGD+A + G + R NG+P V + PG + +R Sbjct: 245 QFAAIVLKAKADGSRVLLGDVARVELG-AQSYAFANRENGKPAGVAAVQLSPGANAVRTA 303 Query: 304 KALDERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDEFLEAVAEAVAIVLVVSLLSL-GIR 362 A+ R E+LR LP G+ + + V+ S+ + ++ + EA+ +V +V L L +R Sbjct: 304 AAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQNVR 363 Query: 363 TGMVVVISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMA-VKLEQ 421 ++ I PI L T M L ++ +++ +VLA+G++VDDAI+ VE + + + Sbjct: 364 YTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIMAHE 423 Query: 422 GWNRHRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLLSWL 481 G A A ++ TLV A F+P+ALA G R A+++L S Sbjct: 424 GLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFSAF 483 Query: 482 AAVVLIPLLGYHMLKEKPGALSDEQIAAQPHAGHDEEDHDHPIYQTRVYTLLRRAVAWCV 541 A+ L P L +L+ P AGH HD + R A Sbjct: 484 LALSLTPALCATLLRPVP-------------AGH----HDKRGFFGAFNRAFNRLTARYE 526 Query: 542 AFRGRVVI--LTTVLFIGSLAAFALV-----PQQFFPSSDRPELLIDLRLPERASFEATQ 594 + GR++ L +L +L+ +V P F P D+ + +LP A+ E T Sbjct: 527 SALGRLIARGLRMMLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTA 586 Query: 595 RETIRMEALLKGRPQIDHYVSFVGVGAPRFYLPLDQQLASANFAQFVVTAKSVEDREALA 654 R + E LKGR I +S +G G + N A K ++R+ Sbjct: 587 RAVDQFERYLKGREDIGANLSVLGFGFSG---------SGPNAAMAFTELKDWKERKGST 637 Query: 655 R--ALEEPLRKQFSGARTRLTRL------ENGPPVGFPVQFRISGEQIPKVRAIAEQVAA 706 SG + L E G GF ++ + Q AE Sbjct: 638 SAAEAMAAQAAMESGVDGMVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLL 697 Query: 707 ELRKESRATNIQFDWDEPAQRSVSFEIDQKRAAELGLSSQQISNFLAMQLSGFTVTQYRE 766 L +SR + + PA SV EID+ +AA LG+S IS+ L+ + F V + Sbjct: 698 ALAAKSRKLSGVYSDGLPAGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPN 757 Query: 767 RDKLISVDLRAPRSERVDPARLATLSMPT-THGPVPLATLGRFHDTLEYGVIWERDRQPT 825 ++ V L+A S R+ + L + + G VPLA L + + P Sbjct: 758 AGRMQQVILQAQASARMQLEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPA 817 Query: 826 ITVLADVRPGVQGIDVTNAVNQKLDALRSELPVGYRINVGGPVEENAKAQSSISAQMPLM 885 + + PGV + +++ L +LP G+ + G + + + M L Sbjct: 818 VRISGSAAPGV----ASGEAMAEMERLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALS 873 Query: 886 VIAVLLLLMVQLQSFGRTLMVVMTAPLGLIGVVAALLLFGQPFGFVAMLGTIAMLGIIMR 945 ++ V L+L +S+ L V++ PLGL+G VAA++L P +G I ++G+ + Sbjct: 874 MLVVFLVLAALYESWSIPLSVMLVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAK 933 Query: 946 NSVILVDQIEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFG----- 1000 N++++V+ Q + G G +A + A+V R RPI +T+ A L ++PL+ ++ Sbjct: 934 NAILIVEFARQLRSEGMGLVEAAIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQR 993 Query: 1001 PMATALMGGITIATILTLFYLPALYALC 1028 + T + GG+ AT+L + ++P + L Sbjct: 994 AIGTGVFGGMVSATVLAVLFVPVFFVLV 1021 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 262/1066 (24%), Positives = 473/1066 (44%), Gaps = 78/1066 (7%) Query: 22 FILALVTLL-GIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKLQET 80 ++LA+ +L G + + L S+ P +V+ +PGATA+ + + +T I +++ Sbjct: 13 WVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDSVTSLIEQEMNGA 72 Query: 81 PDVDFLRSYSRP-GQSQLFFTIKDTAPASQVPQTWYQVRKKVGDMAATLPQGV--KGPYF 137 + ++ S S+ GQ Q+ T +P + V+ ++ + A LP V +G Sbjct: 73 DGLQYIESQSQANGQVQITITF---SPETNPDLAAVDVQNRLKRVEARLPAAVTQQGVQV 129 Query: 138 NDEFGDVYTNIYALAGDG-FTPAQLRDY-ADQLRAELLHVPGVAKIDYFG-DRQEHIYID 194 + I + DG P L DY + + E+ VPGV + FG +R I+ID Sbjct: 130 TKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGTERAMRIWID 189 Query: 195 IGNARMTRLGISPQQLADAIGGQNAVVPGG----LITTGSDRV--YVRPTGQFENLRALE 248 ++ L ++P + AI QNA+V GG L + G+ ++ V GQ + Sbjct: 190 PN--KLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQLTSPEQFG 247 Query: 249 EKII--HINNHNFRLGDIATIHRGYDEPQEQEMRANGQPVLGIGVTMQPGGDVIRLGKAL 306 I+ + N RL D+A + G + + R +G+P IGV + P + + A+ Sbjct: 248 NIILRANANGATVRLRDVARVEVG-GQSYDTSGRLDGKPSSFIGVQLSPTANALGTATAV 306 Query: 307 DERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDEFLEAVAEAVAIVLVVSLLSL-GIRTGM 365 ++ E+L K P G+ T V+ S++E ++ + EA+ +V +V L L IR + Sbjct: 307 HKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQNIRYTI 366 Query: 366 VVVISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMA-VKLEQGWN 424 + I +P+ L T + LF ++ +++ +VLA+G+LVDDAI+ VE + + E+G + Sbjct: 367 IPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIMSEEGLS 426 Query: 425 RHRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIA-LLLSWLAA 483 A A + ++ TLV +A F+P+A G R F +S +A ++ S L A Sbjct: 427 PADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQ-FSLSMVASMVFSVLMA 485 Query: 484 VVLIPLLGYHMLKEKPGALSDEQIAAQPHAGHDEEDHDHPI--YQTRVYTLLRRAVAWCV 541 L P L +LK E+ + G + YQ + +L +A + + Sbjct: 486 FTLTPALCATILKPVEKGHHHEK---KGFFGWFNRKFNSTASGYQGIIGGMLNKAGRYMI 542 Query: 542 AFRGRVVILTTVLFIGSLAAFALVPQQFFPSSDRPELLIDLRLPERASFEATQRETIRME 601 + V+I+ V + + +P F P+ D+ ++ +++LP AS T ++E Sbjct: 543 VY---VLIVACVGLL-----YVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIE 594 Query: 602 ALLKGRPQIDHYV-----SFVGVG--APRFYLPL------DQQLASANFAQFVVTAKSVE 648 P ++H + SF G G A + PL D+ ++ A A S + Sbjct: 595 EYYLKDPAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFS-Q 653 Query: 649 DREALARALEEPLRKQFSGARTRLTRLENGPPVGFP--VQFRISGEQIPKVRAIAEQVAA 706 ++A+ L P + A RL++ +G VQ R QI + A +V A Sbjct: 654 IKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQAR---NQILGM-ASQSKVLA 709 Query: 707 ELRKESRATNIQFDWDEPAQRSVSFEIDQKRAAELGLSSQQISNFLAMQLSGFTVTQYRE 766 +R E Q D ID+ +A LG+ I++ L+ L V + Sbjct: 710 GVRPEGLEDAPQLQLD----------IDRDKANALGVPFSTINSVLSTALGSSYVNDFPN 759 Query: 767 RDKLISVDLRAPRSERVDPARLATLSMPTTHGP-VPLATLGRFHDTLEYGVIWERDRQPT 825 + V ++A R+ P L L + G VP + + + P Sbjct: 760 LGRQQRVIVQADAKRRLQPEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPA 819 Query: 826 ITVLADVRPGVQGIDVTNAVNQKLDALRSELPVGYRINVGGPVEENAKAQSSISAQMPLM 885 + + PG T ++++ ++LP G+ G E + + A L Sbjct: 820 MKIAGGAAPGRS----TGEAMAEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALS 875 Query: 886 VIAVLLLLMVQLQSFGRTLMVVMTAPLGLIGVVAALLLFGQPFGFVAMLGTIAMLGIIMR 945 +IAV L+L +S L V++ PLG++G + + L P +G IA++G+ + Sbjct: 876 LIAVFLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAK 935 Query: 946 NSVILVDQIEQDIAAGRGRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFGP---- 1001 N++++++ + A G+G +A + A RFRPI +T+ A +L ++PL ++ G Sbjct: 936 NAILIIEFAKDLQAQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQR 995 Query: 1002 -MATALMGGITIATILTLFYLPALYALCYRVKPDETHHRDAVAQGS 1046 + T +MGG+ AT+L +F +P + + ++ R A+ S Sbjct: 996 AIGTGVMGGMITATVLAVFLVPIFFVVVRKIFKGSERQRKFDAEHS 1041 >gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1078 Score = 212 bits (540), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 252/1095 (23%), Positives = 467/1095 (42%), Gaps = 104/1095 (9%) Query: 7 FNLSAWTLKHQALVTFILALVTLLGIGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQ 66 N+S ++ T + + L GI ++ L S P + + I PGA+ + Sbjct: 1 MNISLPFIQRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTISISASMPGASPETMA 60 Query: 67 EQITDRIARKLQETPDVDFLRSYSRPGQSQL---FFTIKDTAPASQVPQTWYQVRKKVGD 123 + + R + V + S S +++ F +D A++ Q + + Sbjct: 61 ATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNAARNL-- 118 Query: 124 MAATLPQGVKG--PYFNDEFGDVYTNIYALAGDGFTPAQLRDYADQLRAELL-HVPGVAK 180 LP G+ Y D I A+ D T Q+ D AD + A+ L V GV + Sbjct: 119 ----LPTGMPSNPTYRKVNPADAPILILAMTSDTMTQGQMYDAADSIVAQKLSQVRGVGQ 174 Query: 181 IDYFGDRQEHIYIDIGNARMTRLGISPQQLADAIGGQNAVVPGGLITTGSDRVYVRPTGQ 240 + G Q + I++ + + GI + A+ NA P GL+ + Q Sbjct: 175 VSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQDRNWQIYANDQ 234 Query: 241 FENLRALEEKIIHINNHN-FRLGDIATIHRGYDEPQEQEMRANGQPVLGIGVTMQPGGDV 299 + I+ N R+ D+A + + + +NG+P + I + QPG ++ Sbjct: 235 AKTAAEYAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAG-SSNGKPSVLIIINRQPGANI 293 Query: 300 IRLGKALDERTEQLRKRLPAGLTLTAVSSMPHAVEKSVDEFLEAVAEAVAIVLVVSLLSL 359 I + E QL+ +P+ + + V + S+ E + +VA+V++V L L Sbjct: 294 IDTVDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFL 353 Query: 360 -GIRTGMVVVISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAVK 418 R ++ +++P+ L T MYL L +SL L +A G +VDDAI+ +E ++ Sbjct: 354 RNARATLIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENISRH 413 Query: 419 LEQGWNRHRAAAFAYTSTAFPMLTGTLVTVAGFLPIALAKSGTGEYTRSIFEVSAIALLL 478 +E G ++AA F +L+ ++ +A F+PI + + G R ++A+L+ Sbjct: 414 IESGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILV 473 Query: 479 SWLAAVVLIPLLGYHMLKEKPGALSDEQIAAQPHAGHDE-EDHDHPIYQTRVYTLLRRAV 537 S + ++ P++ +L+ P A DE + H + D I++ + +R + Sbjct: 474 SLVVSLTTTPMMCAQLLRHDPAA--DEARRQRRHPWLQKIADQSAAIFEDMLLA-YQRTL 530 Query: 538 AWCVAFRGRVVILTTVLFIGSLA----AFALVPQQFFPSSDRPELLIDLRLPERASFEAT 593 AW + R L ++ + ++A + +P+ FFP D L+ +R + SF+A Sbjct: 531 AWAL----RAAPLMMLILLATIALNVYLYKAIPKGFFPQQDTGRLVGGIRGDQAISFQAM 586 Query: 594 QRETIRMEALLKGRPQIDHYVSFVGVGAPR----FYL---PLDQQLASANFAQFVVTAKS 646 + + +++ P + V+F G G R Y+ PL ++ SA+ + V + Sbjct: 587 RTKLNEFIDIVRADPAVSDVVAFTG-GQRRNGGFMYVTLKPLSERKDSAD--KVVARLRI 643 Query: 647 VEDREALARALEEPLRKQFSGARTRLTRLENGPPVGFPVQFRISGEQIPKVRAIAEQVAA 706 + A AR P++ GAR ++ E + + + + +R ++ Sbjct: 644 KTAKVAGARVFLVPVQDIRIGARQSDSQYE----------YSLKSDDVGLLRIWEPKIRL 693 Query: 707 ELRKESRATNIQFDWDEPAQRSVSFEIDQKRAAELGLSSQQISNFLA-----MQLSGF-- 759 L +I D + ++ + ID++ A G++ Q I + L+ Q+S Sbjct: 694 ALSNLKELEDISTDQQDNGLQT-TLTIDRETAMRAGVTPQLIDSTLSDLFGQRQISTIYS 752 Query: 760 ----------TVTQYRE-----RDKLISV----DLRAPRSERVDPARLAT---------L 791 QY + RD +S+ +L S P L+ L Sbjct: 753 GMNQYHVVMEAAPQYWQSPETLRDTYVSLAGSSNLSPTTSSLSTPPALSASGKLNANTGL 812 Query: 792 SMPTTHGP---VPLATLGRFHDTLEYGVIWERDRQPTITVLADVRPGVQGIDVTNAVNQK 848 + + P +PLA RF T + + T+ ++ GV T A+++ Sbjct: 813 AQTISTAPSRQIPLAAFSRFEPTTTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRA 872 Query: 849 LDALRSELPVGYRINVGGPVEENAKA-QSSISAQMPLMVIAVLLLLMVQL----QSFGRT 903 + L G NV G A A QSS S+Q PL+++ LL + + L +S Sbjct: 873 MAQL------GVPTNVLGTFAGTANAFQSSTSSQ-PLLILTALLAVYIVLGILYESLIHP 925 Query: 904 LMVVMTAPLGLIGVVAALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVD-QIEQDIAAGR 962 + ++ T P +G + AL++ G F +A++G I ++GI+ +N++++VD I+ + G Sbjct: 926 ITIISTLPSAGVGALLALMVTGTDFSLIALIGVILLIGIVKKNAIMMVDFAIDAERNRGM 985 Query: 963 GRFDAIVGATVRRFRPITLTAAAAVLALIPLLRSNFFG-----PMATALMGGITIATILT 1017 DAI A RFRPI +T AA+L IPL + G P+ +++GG+ ++ +LT Sbjct: 986 SPRDAIFEACKLRFRPIMMTTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLT 1045 Query: 1018 LFYLPALYALCYRVK 1032 L+ P +Y R+ Sbjct: 1046 LYTTPVVYLYMERLS 1060 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 182 bits (463), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 249/1084 (22%), Positives = 464/1084 (42%), Gaps = 147/1084 (13%) Query: 22 FILALVTLLG-IGSYSRLSQSEDPPFTFKVMVIQTDWPGATARQVQEQITDRIARKLQET 80 +++A++ +LG + S LS + P + I+ + GA+A+ +++ +T I ++++ Sbjct: 13 WVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDSVTQVIEQQMK-- 70 Query: 81 PDVDFLRSYSRPGQSQLFFTIKDTAPASQVPQT-WYQVRKKVGDMAATLPQGVK--GPYF 137 +D L+ S S T+ T A P QV+ K+ + A LPQ V+ G Sbjct: 71 -GLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQAVQNNGVTV 129 Query: 138 NDEFGDVYTNIYALAGDG--FTPAQLRDY-ADQLRAELLHVPGVAKIDYFG-DRQEHIYI 193 D+ + +L D T + D+ + L ++ V GV + FG + I+I Sbjct: 130 TKASTDILM-VLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGTNYAMRIWI 188 Query: 194 DIGNARMTRLGISPQQLADAIGGQNAVVPGGLI------------TTGSDRVYVRPTGQF 241 D A++ + + P + A+ QN V G I T + R + +F Sbjct: 189 D--PAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKLTTPDEF 246 Query: 242 ENLRALEEKIIHINNHNFRLGDIATIHRGYDEPQEQEMRANGQPVLGIGVTMQPGGDVIR 301 N+ ++ +L D+A + G E + + NG+P + + + G + + Sbjct: 247 RNIIVKS----SVDGSVVKLSDVARVELG-GESYQVASQQNGKPSSALAIQLATGANALA 301 Query: 302 LGKALDERTEQLRKRLPAGLTLT---AVSSMPHAVEKSVDEFLEAVAEAVAIVLVVSLLS 358 A+ ++ +L PA + L A + P V S++E ++ + EA+ +V+++ L Sbjct: 302 TADAVKKKLAELEPYFPASMKLKTNIAYDTTPF-VRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 359 L-GIRTGMVVVISIPIVLAVTALFMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMAV 417 L IR + I++P+VL T + +F ++ +++ +VLA+GLLVDDAI+ VE Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVE---- 416 Query: 418 KLEQGWNRHRAAAFAYTSTAFPMLTGTLVTVAG-----FLPIALAKSGTGEYTR--SIFE 470 +E+ + + + T + +TG LV +A F+P+A TG R SI Sbjct: 417 NVERLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITI 476 Query: 471 VSAIALLLSWLAAVVLIPLLGYHMLKEKPGALSDEQIAAQPHA-GHDEE----------- 518 VSA+A LS + A+ L P L +LK PHA GH ++ Sbjct: 477 VSAMA--LSVMVALTLTPALCATLLK--------------PHAGGHVQQGRFFTWFNRSF 520 Query: 519 DHDHPIYQTRVYTLLRRAVAWCVAFRGRVVILTTVLFIGSLAAFALVPQQFFPSSDRPEL 578 D YQ V LL+R R +++ ++ + F +P F P D+ L Sbjct: 521 DRSATRYQGGVAGLLKRG--------KRGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVL 572 Query: 579 LIDLRLPERASFEATQRETIRMEALLKGRPQ-IDHYVSFVGVGAPRFYLPLDQQLASANF 637 + ++LP A+ E T ++ +P+ ++ ++ VG G S N Sbjct: 573 MAQIQLPTGATAEQTATVVKTVQEYFMNKPESVESVLAIVGAGVGG---------NSQNG 623 Query: 638 AQFVVTAKSVEDREALARALEEPLRK---QFSGARTRLTRLENGPPV-------GFPVQF 687 A+ + K E R ++ E +R+ S R L N P V GF ++ Sbjct: 624 ARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRGARVFLMNPPAVRGLGQSSGFDLEL 683 Query: 688 R-ISGEQIPKVRAIAEQVAAELRKESRATNIQFD-WDEPAQRSVSFEIDQKRAAELGLSS 745 + + G + +Q R + N++ D+ Q V+ ID ++A L +++ Sbjct: 684 KDVGGVGHDALLQARDQFLQLARSNALLANVRTTGLDDTPQLRVA--IDDRKADALSIAT 741 Query: 746 QQISNFLAMQLSGFTVTQYRERDKLISVDLRAPRSERVDPARL----------------A 789 I+ LA + G V + ++ V ++ + R+ L A Sbjct: 742 SDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRMQADDLNRWYVRNAASQMVPFAA 801 Query: 790 TLSMPTTHGPVPLATLGRFHDTLEYGVIWERDRQPTITVLADVRPGVQGIDVTNAVNQKL 849 +S T+GP + L R++ + ++ E P A V G +V Sbjct: 802 FMSSQWTYGP---SLLERYNGVSSFEIVGE----PA----AGVSSGTAMAEV-------- 842 Query: 850 DALRSELPVGYRINVGGPVEENAKAQSSISAQMPLMVIAVLLLLMVQLQSFGRTLMVVMT 909 + L ++LP G G + + + + ++ V L L +S+ V++ Sbjct: 843 EKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILA 902 Query: 910 APLGLIGVVAALLLFGQPFGFVAMLGTIAMLGIIMRNSVILVDQIEQDIAAGRGRFDAIV 969 PLG+IG V +FG +G + +G+ +N++++V+ +Q +G+ ++A + Sbjct: 903 VPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWEATL 962 Query: 970 GATVRRFRPITLTAAAAVLALIPLLRSNFFGP-----MATALMGGITIATILTLFYLPAL 1024 A R RPI +T+ A + ++PL ++ G + T ++GG+ AT+L +F++P Sbjct: 963 EAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVPLF 1022 Query: 1025 YALC 1028 Y L Sbjct: 1023 YYLI 1026 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,938,611 Number of extensions: 119027 Number of successful extensions: 524 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 452 Number of HSP's successfully gapped: 13 Length of query: 1047 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 952 Effective length of database: 1,170,045 Effective search space: 1113882840 Effective search space used: 1113882840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)