BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0248.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309605|ref|YP_003773697.1| phosphate acetyltransferase [He...   513   e-146
gi|300311722|ref|YP_003775814.1| phosphate acetyl/butaryl transf...   328   4e-91

>gi|300309605|ref|YP_003773697.1| phosphate acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 319

 Score =  513 bits (1320), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 271/319 (84%), Positives = 291/319 (91%)

Query: 1   MFPPTQATPAERYGQLIRDAIGAQPMRVAVVHPCSVEALQGALEARDEGLLEPLLVGPQA 60
           M    QATPAERY QLIRDA+GAQ MRVAVVHPCS EALQGALEARDEGL +P+LVGP+ 
Sbjct: 1   MLQSVQATPAERYDQLIRDALGAQAMRVAVVHPCSPEALQGALEARDEGLFDPVLVGPET 60

Query: 61  KIRHIAEQAGLSLQGLLIEDVEHSHAAAARAVELAIQGQVGALMKGSLHSDELLGAVVGA 120
           +IR IAE A +SLQGL I   EHSHAAAARAVE+A+ G+VGALMKGSLHSDELLGAVVG 
Sbjct: 61  RIRRIAEAADISLQGLPIVPAEHSHAAAARAVEMAVAGEVGALMKGSLHSDELLGAVVGG 120

Query: 121 GSGLRTERRISHVYAMAIPTYAKPLIITDAAINIAPTLAHKRDICQNAIDLLHVMGVPRP 180
            SGLRTERRISHVYAMAIP Y KPLIITDAAINIAPTLAHKRDICQNAIDLLHVMGVPRP
Sbjct: 121 ASGLRTERRISHVYAMAIPAYPKPLIITDAAINIAPTLAHKRDICQNAIDLLHVMGVPRP 180

Query: 181 HVAVLAAVETVNPAMPSTLDAAALTVMATRHQITGAMVDGPLAFDNAISLQSAAIKDIQS 240
           HVAVLAAVETVNPAMPSTLDAAALTVMATRHQITGA+VDGPLAFDNAISLQ+A++K I S
Sbjct: 181 HVAVLAAVETVNPAMPSTLDAAALTVMATRHQITGALVDGPLAFDNAISLQAASVKGIVS 240

Query: 241 PVAGSADILLVPDLEAGNMLAKQLIYLAQAEAAGLVLGARVPVILTSRADSLRVRLASSA 300
           PVAGSADILLVPDLEAGNMLAKQLIYL+QA+AAGLVLGARVP+ILTSRADSLRVRLASSA
Sbjct: 241 PVAGSADILLVPDLEAGNMLAKQLIYLSQADAAGLVLGARVPIILTSRADSLRVRLASSA 300

Query: 301 LARLFASRSKLHAVGKEVA 319
           LARL ASR +L +  +E+A
Sbjct: 301 LARLVASRQRLQSADRELA 319


>gi|300311722|ref|YP_003775814.1| phosphate acetyl/butaryl
           transferase [Herbaspirillum seropedicae SmR1]
          Length = 484

 Score =  328 bits (840), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 173/286 (60%), Positives = 215/286 (75%), Gaps = 1/286 (0%)

Query: 25  PMRVAVVHPCSVEALQGALEARDEGLLEPLLVGPQAKIRHIAEQAGLSLQGLLIEDVEHS 84
           P  VAVVHPC   +L   L+A   GL+ P+LV P++++  +AE   L +    +EDV HS
Sbjct: 196 PAPVAVVHPCDELSLAAVLDAHAAGLISPILVAPRSRLLALAESHKLDISAFPLEDVPHS 255

Query: 85  HAAAARAVELAIQGQVGALMKGSLHSDELLGAVVGAGSGLRTERRISHVYAMAIPTYAKP 144
           HAAAARA+EL + G+V  LMKGSLH++E +GAVV A  GL T+RR+SH Y M  P+Y +P
Sbjct: 256 HAAAARAIELVMHGKVEMLMKGSLHTEEFMGAVV-ACPGLHTKRRMSHCYLMQTPSYPRP 314

Query: 145 LIITDAAINIAPTLAHKRDICQNAIDLLHVMGVPRPHVAVLAAVETVNPAMPSTLDAAAL 204
            IITDAA+NI P LA K DI +NAI+L HV+GV  P VA+LAAVETVNP MP+TLDAAAL
Sbjct: 315 FIITDAAVNIEPGLAEKADIIRNAIELAHVIGVKTPKVAILAAVETVNPRMPATLDAAAL 374

Query: 205 TVMATRHQITGAMVDGPLAFDNAISLQSAAIKDIQSPVAGSADILLVPDLEAGNMLAKQL 264
             MA R QITGA++DGPLAFDNA+S  SA +K I+S VAG ADIL+VPDLE+GN+LAKQL
Sbjct: 375 CKMADRGQITGAILDGPLAFDNAVSPVSARVKGIRSEVAGQADILVVPDLESGNLLAKQL 434

Query: 265 IYLAQAEAAGLVLGARVPVILTSRADSLRVRLASSALARLFASRSK 310
            Y+  A +AGLVLGAR+P+ILTSRADS   RLAS A+AR+ A   +
Sbjct: 435 EYMGGAISAGLVLGARIPLILTSRADSRETRLASCAVARMLAQHYR 480


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 885,856
Number of extensions: 35360
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 3
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)