BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0241.p
         (221 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310462|ref|YP_003774554.1| HAD superfamily haloalkanoic ac...   241   4e-65

>gi|300310462|ref|YP_003774554.1| HAD superfamily haloalkanoic acid
           dehalogenase [Herbaspirillum seropedicae SmR1]
          Length = 222

 Score =  241 bits (614), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 142/219 (64%)

Query: 3   FKPKFISFDCYGTLINFEMGPTAKALFADRVTQERMPAFLDSFRFYRLDEVLGAWKPFFN 62
           FKPKFI+FDCYGTL  F+M  TA+ ++ADRV+ E MP FL  F  YRLDEVL  WKP+  
Sbjct: 4   FKPKFITFDCYGTLTRFQMSETAQKIYADRVSAEDMPFFLRQFAAYRLDEVLDQWKPYEQ 63

Query: 63  VVENSIQRTCHAHGVQYRPSDAQALYDAVPTWQPHPHVVETLEKIAPHIPLVILSNSMID 122
           V +N+I RTC   G+Q    +  A Y AVPTW PH  V   L K+A   PLVI SN+   
Sbjct: 64  VCKNAITRTCARWGIQTNDEETGAFYKAVPTWGPHADVPAGLSKVAKEFPLVIFSNADDS 123

Query: 123 LIPHSVAHLKAPFHAVYTAEEAQAYKPRAQAFEYMFDQLGCGPEEMMHCSSSFRYDMMSA 182
            I H+V  L A FH V+TA++AQAYKPR +AFEYM D L C PE+++H SSS RYD+M A
Sbjct: 124 QIMHNVEQLGAAFHKVFTAQQAQAYKPRLRAFEYMLDNLNCNPEDVLHVSSSLRYDLMPA 183

Query: 183 NDLGFMAKAFIDRNHEPFCDGYGVNRLTDFRQLAGLVGL 221
            D+G   K F+ R HEP    YG   + D   L G++GL
Sbjct: 184 ADMGIKNKVFVARGHEPSTPFYGYTEIKDISGLPGVLGL 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 689,456
Number of extensions: 26853
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,231,600
Effective search space: 171192400
Effective search space used: 171192400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)