BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0238.p (167 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310455|ref|YP_003774547.1| AsnC family transcription regul... 159 9e-41 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 102 1e-23 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 98 4e-22 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 96 2e-21 gi|300311006|ref|YP_003775098.1| transcription regulator protein... 87 8e-19 >gi|300310455|ref|YP_003774547.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 159 bits (403), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 77/150 (51%), Positives = 104/150 (69%) Query: 7 LDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQIALDKLG 66 LDR D++IL HLQ+ R +NV LA+AV LSPSPCL R KR+E++G I+GYGA I L+KL Sbjct: 9 LDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKLA 68 Query: 67 SHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVSAFQELM 126 VF+E+TL HR DF KFE EI+EC+ VSGGYDYLLK + +V +Q ++ Sbjct: 69 DVQIVFTEVTLSDHRREDFAKFESTIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQSVI 128 Query: 127 ERLLEEEIGIKKFASRIVLRHPFAQRVEPV 156 E LLE+ + I+K+ S IV++ PF + P+ Sbjct: 129 ESLLEQNLRIEKYFSYIVIKSPFVKHHYPL 158 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 102 bits (255), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 83/132 (62%) Query: 7 LDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQIALDKLG 66 LD+ KIL LQ +GR SNV+LA V+LSP+ CL R ++++E+G I GY AQ+ + L Sbjct: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 Query: 67 SHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVSAFQELM 126 + VF E+ L P F +F++ EI+EC+ V+GG+DYL+K ++A++E + Sbjct: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 Query: 127 ERLLEEEIGIKK 138 + L + G+++ Sbjct: 124 GKSLLQLKGVRE 135 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 97.8 bits (242), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 83/139 (59%) Query: 7 LDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQIALDKLG 66 LD+ D +IL LQ++GR S EL E V LS +PC+ R +RME G+I GY A++ + LG Sbjct: 11 LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESLG 70 Query: 67 SHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVSAFQELM 126 + + VF EITL F +F + R E+ EC+ VSG +DYL+K ++ +++L+ Sbjct: 71 ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 130 Query: 127 ERLLEEEIGIKKFASRIVL 145 +L + G + S +V+ Sbjct: 131 GDILLQLPGAAQSKSYVVM 149 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 95.5 bits (236), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 52/141 (36%), Positives = 75/141 (53%) Query: 7 LDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQIALDKLG 66 LD TD++IL LQ SN+ELA ++LSPSP L R KR+E GII+ Y A LG Sbjct: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 Query: 67 SHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVSAFQELM 126 V VF ++ L +FE + + E++E Y ++G DYLL+I+ P + + + Sbjct: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 Query: 127 ERLLEEEIGIKKFASRIVLRH 147 L + GIK S L+ Sbjct: 123 VDHLTKIPGIKNIRSSFALKQ 143 >gi|300311006|ref|YP_003775098.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 172 Score = 87.0 bits (214), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 74/140 (52%) Query: 7 LDRTDIKILEHLQREGRCSNVELAEAVSLSPSPCLTRTKRMEESGIIAGYGAQIALDKLG 66 +DR D+ +L LQR+G +N L + V LS S R +R+EE+ +I Y A + +G Sbjct: 6 VDRYDLALLTELQRDGHITNSALGQKVHLSTSQISRRVQRLEEAHVIERYTAVLDPAVVG 65 Query: 67 SHVEVFSEITLGSHRPADFRKFEQGAARYQEIVECYNVSGGYDYLLKIIAPTVSAFQELM 126 V F+ +TL FE+ E+ EC++V+G DY+L+I+AP ++AF E M Sbjct: 66 LGVTAFTTVTLDRQGETRGELFEKAVETMPEVTECFSVTGEGDYILRIVAPDLAAFSEFM 125 Query: 127 ERLLEEEIGIKKFASRIVLR 146 L G+ S I L+ Sbjct: 126 MTRLLRLPGVTNVKSNITLK 145 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 511,967 Number of extensions: 19578 Number of successful extensions: 62 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 9 Length of query: 167 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 88 Effective length of database: 1,245,805 Effective search space: 109630840 Effective search space used: 109630840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)