BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0237.p (254 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309599|ref|YP_003773691.1| enoyl-CoA hydratase [Herbaspiri... 466 e-133 gi|300313417|ref|YP_003777509.1| enoyl-CoA hydratase II protein ... 135 3e-33 gi|300313422|ref|YP_003777514.1| enoyl-CoA hydratase/isomerase [... 113 2e-26 gi|300313175|ref|YP_003777267.1| enoyl-CoA hydratase [Herbaspiri... 112 4e-26 gi|300313068|ref|YP_003777160.1| enoyl-CoA hydratase [Herbaspiri... 110 8e-26 >gi|300309599|ref|YP_003773691.1| enoyl-CoA hydratase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 466 bits (1198), Expect = e-133, Method: Compositional matrix adjust. Identities = 237/254 (93%), Positives = 248/254 (97%) Query: 1 MDIQLTKADGILTIHFDREDKKNAITAAMYQQLADALKDAETDSAVRAILFTGKPQAFSA 60 MDIQL+KADG+LTIHFDREDKKNAITAAMYQQLADALK+AE+DSAVRAILFTGKP+AFSA Sbjct: 3 MDIQLSKADGVLTIHFDREDKKNAITAAMYQQLADALKEAESDSAVRAILFTGKPKAFSA 62 Query: 61 GNDLEDFLKHPPKTQDAPVFQFLWQISHASKPIVAAVAGVAVGIGTTLLLHCDLVYAADN 120 GNDLEDFLK+PPKTQDAPVFQFLWQISHASKPIVAAV+GVAVGIGTTLLLHCDLVYAADN Sbjct: 63 GNDLEDFLKNPPKTQDAPVFQFLWQISHASKPIVAAVSGVAVGIGTTLLLHCDLVYAADN 122 Query: 121 AKFSMPFTQLGLCPEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVNRVMPVEE 180 AKFSMPFTQLGLCPEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVNRVM EE Sbjct: 123 AKFSMPFTQLGLCPEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVNRVMAQEE 182 Query: 181 LLAYAHKQAAKLAALPAASIRLTKQLMKKNRVTATEQQMVVEIEHFSRMLTEPEAKEAFT 240 LL YA +QAAKLAALPAASIR+TKQLMKKNRVTATEQQMV EIEHFSRMLT PEAKEAFT Sbjct: 183 LLPYAQQQAAKLAALPAASIRVTKQLMKKNRVTATEQQMVAEIEHFSRMLTAPEAKEAFT 242 Query: 241 AFFEKRKPDFRQFS 254 AFFEKRKPDF+QF+ Sbjct: 243 AFFEKRKPDFKQFA 256 >gi|300313417|ref|YP_003777509.1| enoyl-CoA hydratase II protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 135 bits (341), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 124/255 (48%), Gaps = 7/255 (2%) Query: 3 IQLTKADGILTIHFDREDKKNAITAAMYQQLADALKDAETDSAVRAILFTGKPQAFSAGN 62 I L DGI I +R DK N+ T AM+ +L DA+ + D +VR +L TG + F AG Sbjct: 6 ILLENRDGIAVITLNRPDKLNSFTVAMHLELRDAIATLQADPSVRVLLLTGAGRGFCAGQ 65 Query: 63 DLEDFLKHPP-------KTQDAPVFQFLWQISHASKPIVAAVAGVAVGIGTTLLLHCDLV 115 DL D P ++ D + + P++ AV GVA G G L L CD+V Sbjct: 66 DLGDRAVKPGDDGVDLGESIDKYYGPLVKSLRALPFPVICAVNGVAAGAGANLPLACDIV 125 Query: 116 YAADNAKFSMPFTQLGLCPEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVNRV 175 AA +A F F +LGL P+ + LP + G RA LLGE A++A + G + + Sbjct: 126 LAARSASFVEVFCKLGLIPDTGGTYFLPRLVGTARAMGMALLGEKISAEQAERWGLIWKC 185 Query: 176 MPVEELLAYAHKQAAKLAALPAASIRLTKQLMKKNRVTATEQQMVVEIEHFSRMLTEPEA 235 + ++L+ AH AA A P + TK + + +Q+ +E + + + Sbjct: 186 VDDDQLMEEAHAMAAHFARAPTKGLAATKATLYASPAHTLPEQLDLERDTMRALGRSRDY 245 Query: 236 KEAFTAFFEKRKPDF 250 +E TAF EKR P F Sbjct: 246 REGVTAFLEKRAPQF 260 >gi|300313422|ref|YP_003777514.1| enoyl-CoA hydratase/isomerase [Herbaspirillum seropedicae SmR1] Length = 262 Score = 113 bits (282), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 120/245 (48%), Gaps = 9/245 (3%) Query: 11 ILTIHFDREDKKNAITAAMYQQLADALKDAETDSAVRAILFTGKPQAFSAGNDLEDFL-K 69 +L + +R +NA+ +++ AL AE D +VR ++ +G +AF+AG DL + + K Sbjct: 19 VLHLTLNRPALRNALRNQSLREIVAALARAEEDDSVRVVVISGNEKAFAAGADLNEMIHK 78 Query: 70 HPPKTQDAPVFQFLWQISHASKPIVAAVAGVAVGIGTTLLLHCDLVYAADNAKFSMPFTQ 129 TQ Q+ I+ KPI+AAV G A+G G LL+H D+ AA AK P Sbjct: 79 DAIATQLDVRAQYWRAIARFPKPILAAVNGYALGAGCELLMHADIAIAARGAKIGQPEIN 138 Query: 130 LGLCPEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVNRVM----PVEELLAYA 185 +G P A + L G A + +L GE AD+A Q G V V+ +E LA A Sbjct: 139 VGTLPGAGGTQRLIRTVGKPLAMKMVLSGEFISADQALQAGLVAEVVDDDATLERTLALA 198 Query: 186 HKQAAKLAALPAASIRLTKQLMKKNRVTATEQQMVVEIEHFSRMLTEPEAKEAFTAFFEK 245 H A K ++RL K+ M ++ E ++ E + FS M + +E AF EK Sbjct: 199 HSIAQK----SPLAVRLAKEAMLQSFELGLEAGLLFERKSFSLMAASADRQEGIAAFQEK 254 Query: 246 RKPDF 250 R F Sbjct: 255 RAAVF 259 >gi|300313175|ref|YP_003777267.1| enoyl-CoA hydratase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 112 bits (279), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 122/255 (47%), Gaps = 6/255 (2%) Query: 2 DIQLTKADGILTIHFDREDKKNAITAAMYQQLADALKDAETDSAVRAILFTGKPQAFSAG 61 +IQ+ + + I R NA++ + +L +AL + + I+ TG +AF+AG Sbjct: 5 NIQVETHEKVGLIRLHRPKALNALSDGLMTELGEALLAFDAQEEIGCIIITGSEKAFAAG 64 Query: 62 NDLEDFLKHPPKTQDAPVFQFL---WQ-ISHASKPIVAAVAGVAVGIGTTLLLHCDLVYA 117 D+ + D +F+ W+ + KP++AAVAG A+G G L + CD + A Sbjct: 65 ADISAMAGY--DYMDVFKGEFITRNWETLRRIRKPVIAAVAGYALGGGCELAMMCDFIIA 122 Query: 118 ADNAKFSMPFTQLGLCPEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVNRVMP 177 ADNAKF P +LG+ P A + LP +A + L G A+EA + G V+R++ Sbjct: 123 ADNAKFGQPEIKLGIVPGAGGTQRLPRAVSKAKAMDLALTGRMMDAEEAERAGLVSRIVA 182 Query: 178 VEELLAYAHKQAAKLAALPAASIRLTKQLMKKNRVTATEQQMVVEIEHFSRMLTEPEAKE 237 ++LL A A +A +P + K + + T + M E F + KE Sbjct: 183 ADKLLEEAMAAAIIIAEMPRQVAMMVKDSVNRAYETTLSEGMKYERALFYSCFATEDQKE 242 Query: 238 AFTAFFEKRKPDFRQ 252 AF EKR+P F+ Sbjct: 243 GMKAFLEKRQPVFKH 257 >gi|300313068|ref|YP_003777160.1| enoyl-CoA hydratase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 110 bits (276), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 11/248 (4%) Query: 10 GILTIHFDREDKKNAITAAMYQQLADALKDAETDSAVRAILFTGKPQAFSAGNDLEDFLK 69 GI T+ +R NA++ M L L D ++DS VR ++ +AF AG+DL Sbjct: 16 GITTLTLNRPQHFNALSEEMLTALQAQLDDIKSDSTVRCVILAANGKAFCAGHDLRQMQA 75 Query: 70 HPPKTQDAPVFQ----FLWQISHASKPIVAAVAGVAVGIGTTLLLHCDLVYAADNAKFSM 125 P +T +F + + P++A V G+A G L+ CDL AA++A+F++ Sbjct: 76 TPQQTYYEALFHRCSHLMQSLRELPVPVIAKVQGLATAAGCQLVATCDLAIAAESARFAV 135 Query: 126 PFTQLGL-C--PEAASSLLLPHIAGYQRAAEKLLLGEAFGADEACQMGFVNRVMPVEELL 182 +GL C P A + LP +RA E L+ G+ A A G +N+ +P +EL Sbjct: 136 SGINVGLFCSTPAVALTRNLP----IKRAFEMLVTGKFIDAATAAAWGLINQAVPEQELD 191 Query: 183 AYAHKQAAKLAALPAASIRLTKQLMKKNRVTATEQQMVVEIEHFSRMLTEPEAKEAFTAF 242 + A ++ + PA SI K ++ + ++ A E + + +PEA+E TAF Sbjct: 192 SATQALAREICSKPAISIARGKAMVYRQQMMALPDAYAHAAEVMACNIMDPEAQEGITAF 251 Query: 243 FEKRKPDF 250 +KRKP++ Sbjct: 252 LDKRKPNW 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.132 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 622,934 Number of extensions: 20130 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 70 Number of HSP's successfully gapped: 8 Length of query: 254 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 171 Effective length of database: 1,226,865 Effective search space: 209793915 Effective search space used: 209793915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)