BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0236.p (398 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 802 0.0 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 269 3e-73 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 259 3e-70 gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 248 4e-67 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 176 4e-45 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/398 (99%), Positives = 397/398 (99%) Query: 1 MSKQLQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVG 60 MSKQLQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVG Sbjct: 1 MSKQLQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVG 60 Query: 61 CSFPEGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAA 120 CSFPEGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAA Sbjct: 61 CSFPEGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAA 120 Query: 121 GAESMSMVPMMGFHPSININAFKDENVGMAYGMGLTAEKVAQQWKVSREAQDEFSLASHQ 180 GAESMSMVPMMGFHPSININAFKDENVGMAYGMGLTAEKVAQQWKVSREAQDEFSLASHQ Sbjct: 121 GAESMSMVPMMGFHPSININAFKDENVGMAYGMGLTAEKVAQQWKVSREAQDEFSLASHQ 180 Query: 181 KAIAAQQAGEFADEMTSFEIVERFPNLATGEIDIKTRTVSLDEGPRADSNLAALGKLKPV 240 KAIAAQ+AGEFADEMTSFEIVERFPNLATGEID+KTRTVSLDEGPRADSNLAAL KLKPV Sbjct: 181 KAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADSNLAALAKLKPV 240 Query: 241 FAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVPPEIMGIGPKE 300 FAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVPPEIMGIGPKE Sbjct: 241 FAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVPPEIMGIGPKE 300 Query: 301 AIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGAIALGHPLGATG 360 AIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGAIALGHPLGATG Sbjct: 301 AIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGAIALGHPLGATG 360 Query: 361 AIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERV 398 AIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERV Sbjct: 361 AIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERV 398 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 269 bits (687), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 176/411 (42%), Positives = 238/411 (57%), Gaps = 28/411 (6%) Query: 5 LQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFP 64 ++D +I A RTPIG+ G K+ R DDL +++ + + P +D K ++D I GC+ Sbjct: 1 MKDVFICDAIRTPIGRYG-GALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQ 59 Query: 65 EGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAES 124 G N+AR ++LLAGLP + G TINR C SG+ A+ AA I+ GE +MIA G ES Sbjct: 60 AGEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVES 119 Query: 125 MSMVP-MMGFHPSI--NINAFKDENVG---------MAYG---MGLTAEKVAQQWKVSRE 169 M+ P +MG S A +D +G YG M TAE VA +KVSR Sbjct: 120 MTRAPFVMGKADSAFSRQAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRA 179 Query: 170 AQDEFSLASHQKAIAAQQAGEFADEMTSFEIVERFPNLATGEIDIKTRTVSLDEGPRADS 229 QD+F++ S KA AAQ G A E+ I ++ + TV+ DE PRA S Sbjct: 180 DQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGD---------PITVTQDEHPRATS 230 Query: 230 NLAALGKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGV 289 + AL +LK V GSVTAGN+S +DGA AL++ S + ++++ L P AR + A GV Sbjct: 231 -MEALARLKGVVKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGV 289 Query: 290 PPEIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGL--DPSKVNPMG 347 P IMG+GP A L G+T DQ+D IELNEAFA+Q LAV+ +LG+ D ++VNP G Sbjct: 290 APRIMGMGPAPASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNG 349 Query: 348 GAIALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERV 398 GAIALGHPLG +GA T + L R +Y + TMC+G G G A + ERV Sbjct: 350 GAIALGHPLGMSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIERV 400 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 259 bits (662), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 178/410 (43%), Positives = 229/410 (55%), Gaps = 29/410 (7%) Query: 7 DAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFPEG 66 +A I A RTP G+ G R DDL I+S + + PG+D +ED + GC+ G Sbjct: 2 EALICDAIRTPFGRY-GGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAG 60 Query: 67 AQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAESMS 126 N+AR A LLAGLP + G T+NR C S + A+ MAA I+ GE +MIA G ESM+ Sbjct: 61 EDNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMT 120 Query: 127 MVP-MMG------------FHPSININAFKDENVGMAYG---MGLTAEKVAQQWKVSREA 170 P +MG F +I F + + YG M TAE VA ++++R Sbjct: 121 RAPFVMGKAESAFARSAAIFDTTIGWR-FVNPLMKAQYGIDSMPETAENVATDFQINRAD 179 Query: 171 QDEFSLASHQKAIAAQQAGEFADEMTSFEIVERFPNLATGEIDIKTRTVSLDEGPRADSN 230 QD F+L S Q+ AAQ AG FA E+ I ++ + V+ DE PR D+ Sbjct: 180 QDAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGD---------PLVVTTDEHPRPDTT 230 Query: 231 LAALGKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVP 290 LA L KLK V G+VTAGN+S +DGA AL++ S K + L P AR + A GV Sbjct: 231 LATLAKLKGVVRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVA 290 Query: 291 PEIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGL--DPSKVNPMGG 348 P IMG GP A+ L GLT Q+D IELNEAFAAQ LAV+ DLGL D + VNP GG Sbjct: 291 PRIMGFGPAPAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGG 350 Query: 349 AIALGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFERV 398 AIA+GHPLGA+GA T I+ L R +Y + TMC+G G G A + ERV Sbjct: 351 AIAIGHPLGASGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIERV 400 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 248 bits (634), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 155/406 (38%), Positives = 229/406 (56%), Gaps = 28/406 (6%) Query: 5 LQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFP 64 + D IVAA RT IGK G DL + I++ +A+ G+ P+ I + I+G Sbjct: 1 MDDVVIVAAQRTAIGKFG-GALSKIAAADLGAQVIKALLAKT-GIKPEAISEVILGQVLT 58 Query: 65 EGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAES 124 G G N AR +V+ +GLP+ + + + C SG+ A+ +AA IR G+A ++IA G E+ Sbjct: 59 AGL-GQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQEN 117 Query: 125 MSMVPMM------GFH-------PSININAFKDENVGMAYGMGLTAEKVAQQWKVSREAQ 171 MS P + GF ++ ++ D V Y MG+TAE VA+++++SRE Q Sbjct: 118 MSASPHVLNNSRDGFRMGDAKLTDTMIVDGLWD--VYNQYHMGITAENVAKKFEISREEQ 175 Query: 172 DEFSLASHQKAIAAQQAGEFADEMTSFEIVERFPNLATGEIDIKTRTVSLDEGPRADSNL 231 D F+ AS KA AAQ+AG+F DE+ EI + +T DE + Sbjct: 176 DAFAAASQNKAEAAQKAGKFKDEIVPIEIKGKK----------ETVVFDTDEFVKHGVTA 225 Query: 232 AALGKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVPP 291 +L L+P F G+VTAGN+S +DGA A+++ S K+ + L LA+ +++ G+ P Sbjct: 226 ESLATLRPAFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDP 285 Query: 292 EIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGAIA 351 IMG+GP A LK G T +D +E+NEAFAAQA+AV +G D SK+N GGAIA Sbjct: 286 SIMGMGPVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIA 345 Query: 352 LGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFER 397 LGHP+GA+G T +H + R++ K G+ ++C+G GMG A ER Sbjct: 346 LGHPIGASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 176 bits (445), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 136/397 (34%), Positives = 194/397 (48%), Gaps = 32/397 (8%) Query: 10 IVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAV--AQVPGLDPKLIEDAIVGCSFPEGA 67 IV+A RT +G +G + L AI +A+ AQ+ IE +GC G Sbjct: 8 IVSAARTAMGSF-QGALADLPAPHLGAVAISAALQRAQLSAAQIAQIEQVWMGCVLQAGL 66 Query: 68 QGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAESMSM 127 G AR A L AGLP T+ T+N+ C S + A+ + D I G A +++A G ESMS Sbjct: 67 -GQAPARQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESMSN 125 Query: 128 VPMM------GF---HPSININAFKDENVGMAYG-------MGLTAEKVAQQWKVSREAQ 171 P + G+ H + + F D + AY MG AE A ++ +R Q Sbjct: 126 APYLLPKARRGYRLGHDRLLDHMFLD-GLEDAYSDQYRGRLMGTFAEDCASEFGFTRAQQ 184 Query: 172 DEFSLASHQKAIAAQQAGEFADEMTSFEIVERFPNLATGEIDIKTRTVSLDEGPRADSNL 231 D F++ S +A A G F E+ ++ + G + +S DEGP A NL Sbjct: 185 DAFAVQSTLRARQAISGGGFDWEVVPVDVAGK-----KGSV-----VISQDEGPMA-VNL 233 Query: 232 AALGKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVPP 291 + LKP F+ G+VTA NSS SDGA AL+++ E + LTPLAR + A P Sbjct: 234 ERIATLKPAFSVDGTVTAANSSSISDGAAALLLMRESAALKQGLTPLARILGHASYAGAP 293 Query: 292 EIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGAIA 351 E P + GL D E+NEAFA +A +L +D K+N GGA A Sbjct: 294 EKFPTAPIGVLRKIFAKTGLDAASTDLFEINEAFAVVPMAASRELDIDMEKINVHGGACA 353 Query: 352 LGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTG 388 LGHP+GA+GA + + AL+ + LK G+ ++C+G G Sbjct: 354 LGHPIGASGARIIVSLLGALKARGLKTGIASLCIGGG 390 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,141,213 Number of extensions: 46961 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 207 Number of HSP's successfully gapped: 6 Length of query: 398 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 311 Effective length of database: 1,207,925 Effective search space: 375664675 Effective search space used: 375664675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)