BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0230.p (964 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspiri... 1488 0.0 gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspiri... 641 0.0 gi|300309621|ref|YP_003773713.1| VGR-related protein [Herbaspiri... 388 e-108 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 309 6e-85 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 291 2e-79 >gi|300309592|ref|YP_003773684.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 966 Score = 1488 bits (3851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 742/967 (76%), Positives = 833/967 (86%), Gaps = 4/967 (0%) Query: 1 MTDNLSTVTTAFAQAILTQQYRPLRLRWSQREAHLSQQLLVQRVELREALLEGVEGQLTC 60 MTD+ +T+T AFA AIL+Q RP+RLRW +E Q LL+QRV+++E LLEG++ QLTC Sbjct: 1 MTDHFATITAAFASAILSQNLRPIRLRWGPQEQRFEQSLLLQRVDIQETLLEGMQVQLTC 60 Query: 61 LSIDPDLPLQELLGQPIGIEMVTDRGGLHHINGLITDARAGHADGALRVYQLTLRDALSV 120 +S DPDLPL LLGQP+G+EMVTDRG LHH NGLITDA AGHADGALRVYQLT+RDALS+ Sbjct: 61 VSTDPDLPLHTLLGQPLGVEMVTDRGRLHHTNGLITDACAGHADGALRVYQLTMRDALSI 120 Query: 121 MGERINTRIFRSKNVPAILEIMLREWRQRSPVLASAFSFDLDRLDDARYPIRELSHQFNE 180 M R+NTRIFR +VP+ILEI+L EWRQRS LA+AF FDLD LDD RYP RE+SHQFNE Sbjct: 121 MEGRVNTRIFRRLSVPSILEILLSEWRQRSSTLAAAFKFDLDGLDDTRYPAREISHQFNE 180 Query: 181 SDAHFIERLCRREGITWYIATPQASDGINTST---TPAHTLVFCDQVALLPQASAASVRY 237 SDAHFI RLCRREGI WY+A+ Q +D +T P HTLVFCDQ ALLP+A+A +VRY Sbjct: 181 SDAHFIRRLCRREGIAWYVASGQQADETAIATHADIPIHTLVFCDQPALLPRAAAGTVRY 240 Query: 238 HRDGATEERDSISAWSCERSLTPASVQRASWDYKSLRINDVVSHGIVDQGRAGTELGLAI 297 HRDGATEERD+ISAWS +RSL P SV R SWDYK++R + SH IVDQG AG +L + Sbjct: 241 HRDGATEERDAISAWSRQRSLVPGSVWRRSWDYKAVRAEEASSHSIVDQGDAGYKLANIL 300 Query: 298 TDRFIEAPHVAENLLDQVRLADARMSAHEGRCESFQASGSVRDLAVGHWFVLERHPDMRY 357 D IEAPH A++ D +RLAD RM AHE R ESF ASG+VRDLAVGHWF+L+ HPDMR Sbjct: 301 RDGLIEAPHAADSQNDHLRLADTRMLAHEARSESFDASGTVRDLAVGHWFLLDGHPDMRG 360 Query: 358 RNASQREFIVTSLQQRAENNFPKVLQDPIQRLLPELQWQAGVPQGASDLRYHNHLTCVRR 417 + +QREF+VTSLQQ+AENNFP VLQD I+RL P W+ + A+DLRY N LTC RR Sbjct: 361 QKPAQREFLVTSLQQQAENNFPTVLQDAIRRLAPASPWK-NLAHSAADLRYRNQLTCRRR 419 Query: 418 TASLSPHYDPRQHLPAVHPITALVVGPAQEEVYCDALGRIKVQLQGLQAEDHAHAQGAGT 477 TA L+PHYDPR HLP VHPITALVVGP++EEVYCD LGRIKVQLQGL EDHAHAQGAG Sbjct: 420 TAPLAPHYDPRLHLPPVHPITALVVGPSKEEVYCDELGRIKVQLQGLHPEDHAHAQGAGA 479 Query: 478 SGHDQDSAFVRVSSAWAGAGYGHDAVPRVGMEVLIDFLGGDPDKMFVAGVLHNGLNLPAR 537 SGH+QDSAFVRVSSAWAGAGYGHDAVPRVGMEVLIDFLGGDPDKMFVAGVLHNG+NLPAR Sbjct: 480 SGHEQDSAFVRVSSAWAGAGYGHDAVPRVGMEVLIDFLGGDPDKMFVAGVLHNGINLPAR 539 Query: 538 FSHAGGLPGNRFLSGIKSKEVDGARYNQLRLDDTPGQISTQLASEHQHSQINLGYLTEPR 597 FSH+G LPGNRFLSGIK+KE+ GARYNQLRLDD+PGQISTQLASEHQHSQ+NLGYLTEPR Sbjct: 540 FSHSGSLPGNRFLSGIKTKEIGGARYNQLRLDDSPGQISTQLASEHQHSQLNLGYLTEPR 599 Query: 598 YDGQGSDRGEGVETRTDGHGVLRAGKGVLITAHRQDRGRGRILERAVLLETLRDLQELAQ 657 + G+G DRGEG+E RTDGHGV+RA KGV+ITA QDRGRGR+LERA LLETL +LQELAQ Sbjct: 600 HGGRGEDRGEGLEARTDGHGVMRAAKGVMITAQSQDRGRGRMLERAALLETLDNLQELAQ 659 Query: 658 RLSQDAARHHAEATDLAQLERIRTQLQAWDASEPASGAVHTETPMIAVDAPAGVSITSQD 717 RLS DAARHHAEATD+AQLERIR QL+AWDA + A+GAV ETPM+AVDAPAGVSITSQD Sbjct: 660 RLSHDAARHHAEATDVAQLERIRAQLRAWDAGDVANGAVRAETPMVAVDAPAGVSITSQD 719 Query: 718 AMVLGSAQHIDMVSQTNTQVSTGRSLLMRAGEMFVAFAAKHMKLISGKGSIKVQAHEEHI 777 MVLG+AQHID+VS+ NTQ+S GR LLMRAGEM AFAAKHMKLISGKGSIK+QAHEEHI Sbjct: 720 TMVLGAAQHIDLVSRANTQLSAGRRLLMRAGEMLSAFAAKHMKLISGKGSIKIQAHEEHI 779 Query: 778 DLSAARRILLEASEEIILQAPKISIRSRENTEITGGGSFSRWNASQIEHGTSGQWRQQAA 837 DLSAARRILLEASEEIILQAPKISIRSRE TE+ GGGSFSRWNAS IEHGTSG+WRQQAA Sbjct: 780 DLSAARRILLEASEEIILQAPKISIRSRETTEVAGGGSFSRWNASAIEHGTSGEWRQQAA 839 Query: 838 EHNVLGPANCPPPDIPPPLTYEQLQQSASLLVRLRSHARDGRLLAHQPYTLLKQGAQIAV 897 H+VLGPANCPPPDIPPP TYE+LQQS+SL+VRLRSHARDGRLLAHQPYTL KQG QIAV Sbjct: 840 MHHVLGPANCPPPDIPPPPTYEELQQSSSLMVRLRSHARDGRLLAHQPYTLFKQGEQIAV 899 Query: 898 GVTDAAGQLRIEGHQPGDNNYSVKLPNGYCFDLPVHEQLSALDEQLAASGYRNAETDAES 957 GVTDAAGQLRI+ HQPGD++YSV+L NGY FDLPV E+L LD QLAASGYR+AETD+ES Sbjct: 900 GVTDAAGQLRIKDHQPGDDSYSVRLSNGYHFDLPVQEELGDLDHQLAASGYRSAETDSES 959 Query: 958 RLRHAGA 964 RLRHAGA Sbjct: 960 RLRHAGA 966 >gi|300309366|ref|YP_003773458.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 913 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/905 (41%), Positives = 527/905 (58%), Gaps = 31/905 (3%) Query: 13 AQAILTQQYRPLRLRWSQREAHLSQQLLVQRVELREALLEGVEGQLTCLSIDPDLPLQEL 72 A + TQ+ R +RLR L LLV V RE+L +E +L CL+ DL L++ Sbjct: 9 ALSTWTQKARAIRLRLPPSHQALQDALLVMHVTGRESLCGAMEYELLCLTSREDLALEDF 68 Query: 73 LGQPIGIEMVTDRGGLHHINGLITDARAGHADGALRVYQLTLRDALSVMGERINTRIFRS 132 + P+ I++VTD G L + G I +A AG D L Y+L LRDALS+MG RINTR+F Sbjct: 69 VALPVEIQLVTDLGLLRTVCGFIAEAHAGQLDDELVSYRLVLRDALSLMGHRINTRVFLR 128 Query: 133 KNVPAILEIMLREWRQRSPVLASAFSFDLDRLDDARYPIRELSHQFNESDAHFIERLCRR 192 + + + ++ EWRQRSP++AS+F D L + R+P RE Q NESDA F+ RL +R Sbjct: 129 ASEADVTQALVSEWRQRSPLMASSFEVDWSLLAE-RFPAREFIMQHNESDADFLRRLWKR 187 Query: 193 EGITWYIATPQASDGINTSTTPAHTLVFCDQVALLPQASAASVRYHRDGATEERDSISAW 252 GI+W+I P + + +P HTLV D LP+ +A +V Y +D A E D I W Sbjct: 188 RGISWFI-RPGEPPLPHQAGSPRHTLVLFDDAVQLPRNAAGAVSYRQDHAPAEEDGIVRW 246 Query: 253 SCERSLTPASVQRASWDYKSLRINDVVSHGIVDQGRAGTELGLAITDRFIEAPHVAENLL 312 R L SV R +WD+ + + +QG G + D FIEAPH+A++ Sbjct: 247 LGTRRLRAGSVSRHAWDHAQDGPMRSQVNTVAEQGELGDHFARLLDDYFIEAPHIADDRE 306 Query: 313 DQVRLADARMSAHEGRCESFQASGSVRDLAVGHWFVLERHPDMRYRNASQREFIVTSLQQ 372 D ++A ARM FQA ++R L VG W ++ HP++ R A +REF++T L+ Sbjct: 307 DFHQIATARMQRLAQETAEFQADSTIRALRVGEWIGVKDHPELDRRAAHEREFVITRLEV 366 Query: 373 RAENNFPKVLQDPIQRL----------LPELQWQAGVPQGASDLRYHNHLTCVRRTASLS 422 AENNFP L + ++ + L L+ + + QG RY N TCVRR L Sbjct: 367 YAENNFPASLDEHVRLVARHHDSSLEDLAPLRRRC-LAQGR---RYLNRFTCVRRGTPLV 422 Query: 423 PHYDPRQHLPAVHPITALVVGPAQEEVYCDALGRIKVQLQGLQAEDHAHAQGAGTSGHDQ 482 +DPR LPAV A VVGPA EE+YCDALGRIK++ G + +DH HA GAG SG ++ Sbjct: 423 AAFDPRVDLPAVRVQNAHVVGPAGEELYCDALGRIKLRFHGTRMQDHQHAGGAGASGSER 482 Query: 483 DSAFVRVSSAWAGAGYGHDAVPRVGMEVLIDFLGGDPDKMFVAGVLHNGLNLPARFSHAG 542 DSA+VRV+S WAG +G ++PRVG EVL+DFLGGDPDK V G ++NG +LP FS G Sbjct: 483 DSAWVRVASHWAGRQWGAISLPRVGDEVLVDFLGGDPDKPIVVGRVYNGQSLPPAFSRVG 542 Query: 543 GLPGNRFLSGIKSKEVDGARYNQLRLDDTPGQISTQLASEHQHSQINLGYLTEPRYDGQG 602 LPGNRFL+GIKSKE+ G RYNQLRLDDTP QIS QLAS+H S++NLG+LT PR G+ Sbjct: 543 SLPGNRFLAGIKSKEIQGQRYNQLRLDDTPQQISAQLASQHGQSELNLGWLTHPRAGGRS 602 Query: 603 SDRGEGVETRTDGHGVLRAGKGVLITAHRQDRGRGRILERAVLLETLRDLQELAQRLSQD 662 RGEG E RTD LR G+GVLI+A + G L+RA +L L LQ++ Q+L+ Sbjct: 603 DARGEGAELRTDQALALRGGQGVLISAVMRQEASGTQLDRAEMLGLLHVLQDVQQQLATL 662 Query: 663 AARHHAEATDLAQLERIRTQLQAWDA-SEPASGAVHTETPMIAVDAPAGVSITSQDAMVL 721 A HHA+ T L R+R QL AW+A S + + PM+AV APAGV+ITS + + L Sbjct: 663 AQTHHADDTQLQTFSRLRDQLDAWEAGSNTQAKSDGGGKPMVAVTAPAGVAITSDEGVAL 722 Query: 722 GSAQHIDMVSQTNTQVSTGRSLLMRAGEMFVAFAAK-HMKLISGKGSIKVQAHEEHIDLS 780 G+ + ID++S NTQ S G+ LL R E FA + ++L++ G +++Q H ++++ Sbjct: 723 GAQKEIDLISVGNTQFSAGKKLLARVAESICLFAQRLGIQLVAANGKLQLQTHGGDVEVT 782 Query: 781 AARRILLEASEEIILQAPKISIRSRENTEITGGGSFSRWNASQIEHGTSGQWRQQAAEHN 840 +ARRI+L A++EI+LQAP++ ++++ GGG I +SG ++ + Sbjct: 783 SARRIVLTAADEIVLQAPRLRLQAQGAQIDLGGGV--------ITQQSSGDHVIRSGNFH 834 Query: 841 VLGPANCPPPDIPPPLTYEQLQQSASLLVRLRSHARDGRLLAHQPYTLLKQGAQIAVGVT 900 + A+ PP + P + + + L R GR Q Y + + GVT Sbjct: 835 HVSGADSQPPGVELPASTMRTDERFILARR-----GSGRPHVRQRYRIELDDGSVIEGVT 889 Query: 901 DAAGQ 905 D G+ Sbjct: 890 DEQGR 894 >gi|300309621|ref|YP_003773713.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 912 Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust. Identities = 287/866 (33%), Positives = 435/866 (50%), Gaps = 35/866 (4%) Query: 1 MTDNLSTVTTAFAQA---ILTQQYRPLRLRWSQREAHLSQQLLVQRVELREALLEGVEGQ 57 +T S++T+A A +LT + R LRL Q+L+ +V EA+ V + Sbjct: 2 LTMTASSMTSASFGAFLNLLTHERRLLRLHLPSSAPSAVQRLVALQVTGTEAVCGNVIYR 61 Query: 58 LTCLSIDPDLPLQELLGQPIGIEMVTDRGGLHHINGLITDARAGHADGALRVYQLTLRDA 117 + C S DL + L G PIG + GG + GL T R H++ + ++ L DA Sbjct: 62 VQCASSAADLDIHALQGVPIGFSVKEGDGGAALVCGLATSVRQIHSEAGAVLLEIELCDA 121 Query: 118 LSVMGERINTRIFRSKNVPAILEIMLREWRQRSPVLASAFSFDLDRLDDARYPIRELSHQ 177 L ++ +R R+F +V I E +L E R + VLA+A + + L A YP R Q Sbjct: 122 LRLLEQRKTWRVFCDLSVLEISEQILTEHRHDNSVLAAALRWHVSGLHKA-YPKRAFVMQ 180 Query: 178 FNESDAHFIERLCRREGITWYIATPQASDGINTSTTPAHTLVFCDQVALLPQASAASVRY 237 ESDA F++RL R+EGI W+ A +G P H L D + P SA ++R+ Sbjct: 181 AGESDADFLQRLWRQEGIAWHFRF--ALEG----NEPVHHLHLADHPSAYPDHSAVALRF 234 Query: 238 HRDGATEERDSISAWS--CERSLTPASVQRASWDYKSLRINDVVSHGIVDQGRAGTELGL 295 H+ G E+ D+++ W CE+S+ V ++DYK+ R + + AG L Sbjct: 235 HQAGVMEQTDTVTHWEAWCEQSID--EVTLTAFDYKANRCTQAQEKALRGKDGAGLALAR 292 Query: 296 AITDRFIEAPHVAENLLDQVRLADARMSAHEGRCESFQASGSVRDLAVGHWFVLERHPDM 355 + D P +A L Q ++A R+ AHE + +A VR L G F + HP + Sbjct: 293 TLEDYEYAPPVLAAGLAHQQQMARRRIEAHELAAQGCRARSVVRSLRAGTVFRISGHPHL 352 Query: 356 RYRNASQREFIVTSLQQRAENNF---PKVLQDPIQRLLPELQWQAGVPQGASDL-RYHNH 411 + F VT L A N+ + + ++ LP A Q A DL Y N Sbjct: 353 DTLTEREARFTVTQLTLYARNSLVLDAEWMAPLMKEWLPARA--ALGDQTALDLPVYCNG 410 Query: 412 LTCVRRTASLSPHYDPRQHLPAVHPITALVVGPAQEEVYCDALGRIKVQLQGLQAEDHAH 471 CV+ ++ P YDP + +P + ++A+VVG +EV D LGRI V+ L H Sbjct: 411 FDCVQSDTAIVPRYDP-EDVPKLGLMSAVVVGDGDKEVDVDELGRIAVRF--LFTRPQEH 467 Query: 472 AQGAGTSGHDQDSAFVRVSSAWAGAGYGHDAVPRVGMEVLIDFLGGDPDKMFVAGVLHNG 531 +G G SG DSA +R+ WA AG+G PRVG E+LI FL PDK G L++G Sbjct: 468 PRGRGASGTTGDSARIRILQPWADAGFGTAFWPRVGSEILIAFLQNHPDKPVALGGLYDG 527 Query: 532 LNLPARFSHAGGLPGNRFLSGIKSKEVDGARYNQLRLDDTPGQISTQLASEHQHSQINLG 591 + P +FS G LP N LSGI+SKE+ R+N L DD+ GQIS Q+ S+H +Q+N G Sbjct: 528 THYPPKFSRQGKLPENSALSGIRSKELKANRHNHLLFDDSRGQISAQMFSDHAATQLNQG 587 Query: 592 YLTEPRYDGQGSDRGEGVETRTDGHGVLRAGKGVLITAHRQDRGRGRILERAVLLETLRD 651 +L PR +G+ + RGEG E TD G LR G+LITA + G L R L ++ Sbjct: 588 WLGSPRTEGRSAPRGEGFELATDAAGCLRTAHGLLITAFARLNASGNQLAREETLALMQQ 647 Query: 652 LQELAQRLSQDAARHHAEATDLAQLERIRTQLQAW-DASEPASGAVHTETPMIAVDAPAG 710 +L + + AA+H A+A D A ER+ QLQ W + S A P++AV APAG Sbjct: 648 CVQLFTGIGEYAAQHQAKAGDHAPHERLHRQLQQWENGSNTKPDAGDGGAPVVAVTAPAG 707 Query: 711 VSITSQDAMVLGSAQHIDMVSQTNTQVSTGRSLLMRAGEMFVAFA-AKHMKLISGKGSIK 769 + ++ + V + ++ D V+ + Q+++G L AG+ FA ++ + LI+ +G +K Sbjct: 708 LHFSTPETAVTHAGENCDTVALRHIQLASGEHLTANAGKGISLFAQSEDLTLIAHQGELK 767 Query: 770 VQAHEEHIDLSAARRILLEAS--EEIILQAPKISIRSRENTEITGGGSFSRWNASQIEHG 827 +Q+ ++AA+ + L AS + I+ A +I + + + GS+ R +I+ G Sbjct: 768 LQSQHNDTKVAAAKNLSLTASGGKVQIIAADEILLAASD-------GSYLRLGGGKIDMG 820 Query: 828 TSGQWRQQAAEHNVLGPANCPPPDIP 853 SG AA H + A P ++P Sbjct: 821 CSGAATIHAATHRWI-DAQTTPGELP 845 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 309 bits (792), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 275/939 (29%), Positives = 427/939 (45%), Gaps = 94/939 (10%) Query: 13 AQAILTQQYRPLRLRWSQREAHLSQQLLV-QRVELREALLEGVEGQLTCLSIDPDLPLQE 71 +QA +TQ R L+L ++ L +L+ QR+ E L +G E + L+ + L++ Sbjct: 12 SQARITQHRRLLQL-----DSSLGPDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQ 66 Query: 72 LLGQPIGIEMVTDRGGLHHINGLITDARAGHADGALRVYQLTLRDALSVMGERINTRIFR 131 L+ QP+ + + G ++G + A+ +DG L QL+L L + R + RI++ Sbjct: 67 LIAQPVTLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQ 126 Query: 132 SKNVPAILEIMLREWRQRSPVLASAFSFDLDRLDDARYPIRELSHQFNESDAHFIERLCR 191 K IL + P + F L+R Y R Q+ E+D HF++RL Sbjct: 127 DKRTEDILADVF----NNHPQARGHYRFQLER----PYTPRPYCTQY-ETDWHFVQRLME 177 Query: 192 REGITWYIATPQASDGINTSTTPAHTLVFCDQVALLPQASAASVRYHRDGATEERDSISA 251 EG W+ Q DG H LV D LP + +H +E D I Sbjct: 178 EEG--WFAHHEQREDG------SGHVLVITDNTWNLPGLPQQGIAFHGAAPRDELDKILH 229 Query: 252 WSCERSLTPASVQRASWDYKSLRINDVVSHGIV-DQGRAGTELGL-----AITDRFIEAP 305 WS R+L+ + S DYKS + ++ + G+ +L + A + R E Sbjct: 230 WSASRTLSSKGWRGRSDDYKSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQG 289 Query: 306 HVAENLLDQVRLADARMSAHEGRCESFQASGSVRDLAVGHWFVLERHPDMRYRNASQREF 365 + R AD ++ E + + A VR+LA G WF LE HP R +R+F Sbjct: 290 N---------RQADLQVEQWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQF 340 Query: 366 IVTSLQQRAENN---------FPKVLQDPIQRLLPELQWQAGVPQGASDLRYH--NHLTC 414 ++ ++ ENN FP L+ + ++ + V + ++ H N Sbjct: 341 VILAIDWFVENNLPLSHQALDFPGSLKGALMAFKESIRRERQVAETDNEHTGHCFNRFEV 400 Query: 415 VRRTASLSPHYDPRQHL-PAVHPITALVVGPAQEEVYCDALGRIKVQLQGLQAEDHAHAQ 473 RR P R H P + P TA+VVGPA EEVY D L RIKVQ + + Sbjct: 401 QRRKLPFRP---ARAHARPVMLPQTAIVVGPASEEVYTDHLDRIKVQFRWDRI------- 450 Query: 474 GAGTSGHDQDSAFVRVSSAWAGAGYGHDAVPRVGMEVLIDFLGGDPDKMFVAGVLHNGLN 533 G++ S +VRVS AG +G VPR+G EV++ FL GDPD+ V G L N Sbjct: 451 ---NPGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGDPDRPVVTGRLFNAEQ 507 Query: 534 LPARFSHAGGLPGNRFLSGIKSKEVDGARYNQLRLDDTPGQISTQLASEHQHSQINLGYL 593 P + N LSG+KSKE G +NQ+ +DDTP Q L S + H+Q+NLG+L Sbjct: 508 RPQWHT-------NGRLSGVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTHAQLNLGHL 560 Query: 594 TEPRYDGQGSDRGEGVETRTDGHGVLRAGKGVLITAHRQDRGRGRILERAVLLETLRDLQ 653 + + S G G TD +G + KG+ I+ + + +G L+ L+ Sbjct: 561 VSQTGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGAQGTQLDAREATGQLKSGA 620 Query: 654 ELAQRLSQDAARHHAEATDLAQLERIRTQLQAW--DASEPASG-AVHTETPMIAVDAPAG 710 L++ LS+ AA+ AE LA E +R + A D +P+ A + ++ +P G Sbjct: 621 NLSRTLSETAAKAGAEP--LAGQEALRDFIDATQADYEDPSQAQANRFQQAILLAASPDG 678 Query: 711 VSITSQDAMVLGSAQHIDMVSQTNTQVSTGRSLLMRAGEMFVAFAAKH-MKLISGKGSIK 769 + +T+ + + I + S +T ++ G+SLL E FA K +KL S KG ++ Sbjct: 679 IGLTTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAFKAGIKLFSAKGKVE 738 Query: 770 VQAHEEHIDLSAARRILLEASEEIILQAPKISIRSRENTEITGGGSFSRWNASQIEHGTS 829 VQA + ++L A E ++ + ++ IR++E IT GGSF R NAS I GTS Sbjct: 739 VQAQSDDLELIA------EKVARLLSASGRVEIRAKEEVLITAGGSFIRLNASGITQGTS 792 Query: 830 GQWRQQAAEHNVLGPANCPPPDIPPPLTYEQLQQSASLLVRLRSHAR---DGRLLAHQPY 886 G W +A H + GP L YE + SA+L R D + ++ + Sbjct: 793 GAWEAKAGTHAMPGPTT---------LAYEMNKSSAALPFDEEFVLRWPYDQSPVKNRRF 843 Query: 887 TLLKQGAQIAVGVTDAAGQLRIEGHQPGDNNYSVKLPNG 925 +++ GVTDA G+ ++ +N LP G Sbjct: 844 EIVRGDGTKVRGVTDAQGKTGLQKSLFVENTSLRILPEG 882 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 291 bits (744), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 257/928 (27%), Positives = 409/928 (44%), Gaps = 83/928 (8%) Query: 3 DNLSTVTTAFAQAILTQQYRPLRLRWSQREAHLSQQLLV-QRVELREALLEGVEGQLTCL 61 DN+ T +A A + Q+ R L+L ++ L +L+ QR+ E L G + + + Sbjct: 14 DNVLTTLSALADTFVGQEKRILKL-----DSVLGPDVLLPQRMVGSERLGRGYDYTIDLV 68 Query: 62 SIDPDLPLQELLGQPIGIEMVTDRGGLHHINGLITDARAGHADGALRVYQLTLRDALSVM 121 S D+ L++L+ QP+ + + D ++G + AR +DG L +Q+ + L + Sbjct: 69 STRDDIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFL 128 Query: 122 GERINTRIFRSKNVPAILEIMLREWRQRSPVLASAFSFDLDRLDDARYPI------RELS 175 R + RI++ IL A F + R+ I R Sbjct: 129 KYRKDARIWQDSKADDIL--------------ADVFDQHAYARGNYRFEIVTPALPRSYC 174 Query: 176 HQFNESDAHFIERLCRREGITWYIATPQASDGINTSTTPAHTLVFCDQVALLPQASAASV 235 Q+ E+D HF++RL EG WY Q DG H LV D + + Sbjct: 175 TQY-ETDWHFVQRLMEEEG--WYAYHEQKPDG------SGHVLVITDNTDQAKPLAPEQL 225 Query: 236 RYHRDGATEERDSISAWSCERSLTPASVQRASWDYKSLRINDVVSHGIV-DQGRAGTELG 294 +H G +E + I WS R L + + DYKS ++ + G EL Sbjct: 226 AFHGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQKQTQERVLPEHGALPGELE 285 Query: 295 LAITDRFIEAPHVAENLLDQVRLADARMSAHEGRCESFQASGSVRDLAVGHWFVLERHPD 354 + P+ D R A R+ E + F R LA G WF L HP Sbjct: 286 VYE----YSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGVSGARTLAAGRWFTLTDHPA 341 Query: 355 MRYRNASQREFIVTSLQQRAENNFP--KVLQDPIQRLLPELQ-WQAGVPQGASDL----- 406 R + +F++ +++ ENN P +D L P+L ++A + + D Sbjct: 342 HRGDSKQDSQFMLIAVEWFIENNLPLSGTARDFPGSLKPQLDAFKASMGRSNDDAGGNAR 401 Query: 407 --RYHNHLTCVRRTASLSPHYDPRQHL-PAVHPITALVVGPAQEEVYCDALGRIKVQLQG 463 N RR P+ P H P +HP TA+VVGP EEV+ D L R+KVQ + Sbjct: 402 TGHCFNRFEVQRRKL---PYRSPFDHTKPVMHPQTAVVVGPQGEEVFTDKLNRVKVQFRW 458 Query: 464 LQAEDHAHAQGAGTSGHDQDSAFVRVSSAWAGAGYGHDAVPRVGMEVLIDFLGGDPDKMF 523 + G ++ S +VRVS AG +G VPRVG E++I FL GDPD+ Sbjct: 459 DRI----------NPGDEKASCWVRVSYPNAGENWGEVKVPRVGQELIISFLNGDPDRPV 508 Query: 524 VAGVLHNGLNLPARFSHAGGLPGNRFLSGIKSKEVDGARYNQLRLDDTPGQISTQLASEH 583 G L N P H G LSG+KSKE G +NQL +DDT Q L S Sbjct: 509 ATGRLFNQEQPPQW--HTDGR-----LSGLKSKEFGGNGFNQLVMDDTTSQNRVHLYSSQ 561 Query: 584 QHSQINLGYLTEPRYDGQGSDRGEGVETRTDGHGVLRAGKGVLITAHRQDRGRGRILERA 643 ++Q+NLGYL + + + G G TD +G + KG+ ++++ + +G L+ + Sbjct: 562 SNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRPGPQGTQLDAS 621 Query: 644 VLLETLRDLQELAQRLSQDAARHHAEATDLAQLERIRTQLQAWDASEPASGAVHTETPMI 703 ++ +LA+ LS A+R AEA L+ + + + A + P++ Sbjct: 622 EATSLMKASADLARGLSDSASRAGAEALAQDSLKDFVDATEDKYSGQGQGSANRFKKPLL 681 Query: 704 AVDAPAGVSITSQDAMVLGSAQHIDMVSQTNTQVSTGRSLLMRAGEMFVAFAAKH-MKLI 762 + APAG+ + + + SAQ + S +T +++G+SLL E FA MKL Sbjct: 682 MMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKISLFAQNAGMKLF 741 Query: 763 SGKGSIKVQAHEEHIDLSAARRILLEASEEIILQAPKISIRSRENTEITGGGSFSRWNAS 822 + KG +++QA + +DL A E ++ + ++ I +++ I+ GGSF + N++ Sbjct: 742 AAKGKVEIQAQSDDLDLIA------EKVARLLSTSGRVEIHAKDEVMISAGGSFIQINSA 795 Query: 823 QIEHGTSGQWRQQAAEHNVLGPANCPPPDIPPPLTYEQLQQSASLLVRLRSHARDGRLLA 882 I GT G+W +A+ H++ GPA+ + P + +LQ S + R G LA Sbjct: 796 GITQGTPGKWEAKASLHSMPGPASQ--NFVMPHVQKSELQPSD---MEFRHLTDWGEPLA 850 Query: 883 HQPYTLLKQGAQIAVGVTDAAGQLRIEG 910 Y + + G DA G R+ G Sbjct: 851 GAAYKAILSDGSVRKGTLDAQGIARLSG 878 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,152,885 Number of extensions: 140867 Number of successful extensions: 506 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 438 Number of HSP's successfully gapped: 11 Length of query: 964 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 870 Effective length of database: 1,174,780 Effective search space: 1022058600 Effective search space used: 1022058600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)