BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0228.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309591|ref|YP_003773683.1| phospholipase [Herbaspirillum s...   605   e-174
gi|300309589|ref|YP_003773681.1| phosphatidylserine/phosphatidyl...   235   3e-63

>gi|300309591|ref|YP_003773683.1| phospholipase [Herbaspirillum
           seropedicae SmR1]
          Length = 643

 Score =  605 bits (1559), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 295/405 (72%), Positives = 324/405 (80%), Gaps = 41/405 (10%)

Query: 1   AVGYVMGLNSVTDYWDTRQHLFHDPRRGASWEGGGDDLPGLKPFQDYACRICGEALISVS 60
           AVGYVMGLNSVTDYWDTR+HLF+DPRRG SWEGGGDDLPGLKP QDYACRICGE LISVS
Sbjct: 239 AVGYVMGLNSVTDYWDTREHLFYDPRRGHSWEGGGDDLPGLKPLQDYACRICGETLISVS 298

Query: 61  KNFVDAWNRVAASDQKIQRTHDLRSPPAGLRKSAGKSTHRAQIVRTQAEEGDKTIQRLYR 120
           KNFVDAWNRVA ++QKI+RTHDLRSPPAGL+KSA  STHRAQIVRTQ EEGDKTIQRLYR
Sbjct: 299 KNFVDAWNRVATANQKIKRTHDLRSPPAGLKKSANNSTHRAQIVRTQPEEGDKTIQRLYR 358

Query: 121 QATSFASNYIYIENQYFQYTEWARYLKQLRRDFIAAWKAAGQPMKKLPDLHVFIVTPSPE 180
           QATSFASNYIYIENQYFQYTEWA+YLKQLRRDFIAAWKAAGQPMKKLPDLHVFIV P+PE
Sbjct: 359 QATSFASNYIYIENQYFQYTEWAKYLKQLRRDFIAAWKAAGQPMKKLPDLHVFIVIPTPE 418

Query: 181 RVQMVPATHETVRELGHGPSMPNQD-----------------KKVE-------------- 209
           R QMVPATH+TV+ LGHG SMPNQD                 K+VE              
Sbjct: 419 RTQMVPATHDTVKALGHGASMPNQDKELERELAEERAHQERMKEVERHEFKEREDGAPPE 478

Query: 210 ----------GKSSNSNAEIAKELESLGIKTLVASLWTYDHAGDSKGEKYREIYIHSKLM 259
                       +  SNA+IAKEL+SLGIKTLVASLWTYDH G SKGEKYREIYIHSKLM
Sbjct: 479 LVRKPKALTPNTNPRSNADIAKELDSLGIKTLVASLWTYDHDGVSKGEKYREIYIHSKLM 538

Query: 260 IIDDAFFTLGSANLNLRSMAVDAEINIGCDDARLSGKLRKEVFVLHSANADGCSGGDGST 319
           IIDDAFFTLGSANLNLRSMAVDAEINIGCDD RLS KLR+EVF LH+ N++   GGDGS+
Sbjct: 539 IIDDAFFTLGSANLNLRSMAVDAEINIGCDDPRLSEKLRREVFSLHAGNSEQSDGGDGSS 598

Query: 320 SEMGSTFSRWEKLLVKNRVAKSGAAAPHGFLHPFRDDRSSFLRIA 364
           + + +TF  WE+LL+ N+V +    +P GFL PF D R+S +R A
Sbjct: 599 TSIANTFILWERLLITNKVKREEKNSPVGFLIPFEDKRTSKIRFA 643


>gi|300309589|ref|YP_003773681.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 222

 Score =  235 bits (600), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 124/222 (55%), Positives = 143/222 (64%), Gaps = 41/222 (18%)

Query: 184 MVPATHETVRELGHGPSMPNQDKKVEGK-------------------------------- 211
           MVPA+H+TV+ LGHG SMPNQDK++E +                                
Sbjct: 1   MVPASHDTVKALGHGTSMPNQDKELESELARERAHQERMKEVERHEFKEREDGAPPELVR 60

Query: 212 ---------SSNSNAEIAKELESLGIKTLVASLWTYDHAGDSKGEKYREIYIHSKLMIID 262
                    +  SNA+IAKEL+SLGIKTLVASLWTYDH G SKGEKYREIYIHSKLMIID
Sbjct: 61  KPKALTPNTNPRSNADIAKELDSLGIKTLVASLWTYDHDGVSKGEKYREIYIHSKLMIID 120

Query: 263 DAFFTLGSANLNLRSMAVDAEINIGCDDARLSGKLRKEVFVLHSANADGCSGGDGSTSEM 322
           DAFFTLGSANLNLRSMAVDAEINIGCDD RLS  LR  VF +H+ +A  C+GGDG    +
Sbjct: 121 DAFFTLGSANLNLRSMAVDAEINIGCDDPRLSKNLRSRVFTMHTDDAIRCNGGDGGHHAI 180

Query: 323 GSTFSRWEKLLVKNRVAKSGAAAPHGFLHPFRDDRSSFLRIA 364
              F  W KLL +NR++K       GFL PF D R+S +RIA
Sbjct: 181 QEAFDAWVKLLSENRISKDDQKPCKGFLIPFEDKRTSNMRIA 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,182,113
Number of extensions: 47671
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 3
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)