BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0227.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 sub... 795 0.0 gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 sub... 778 0.0 >gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 subfamily [Herbaspirillum seropedicae SmR1] Length = 518 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/522 (73%), Positives = 443/522 (84%), Gaps = 6/522 (1%) Query: 1 MKDLPRNMPLRAFDPHRKDFSCSYEAQAEPPVDPQAERWFLEGLAATSNDLWPDEKNYEN 60 M D RNMPL AFDPH ++FSC YE +EP +D QAE WF EG+A TSNDLWPD+++Y+ Sbjct: 1 MNDFTRNMPLAAFDPHSREFSCKYEKDSEPILDEQAEDWFREGMAVTSNDLWPDDRDYKR 60 Query: 61 AADLWKRAAEKKYWKAMLNLASLYAYGLGINQDTEQAVQLVEEVMRMGIPKAFDLMGSYH 120 AA LWK+AA+K +WKAMLNLA LY G GI +DTEQAV LVE+ M+MG+P+A++LMG YH Sbjct: 61 AASLWKKAAQKNHWKAMLNLAGLYLDGRGILRDTEQAVVLVEDAMKMGVPRAYELMGRYH 120 Query: 121 MDGIGVEQNPTRAYAFWALAADMGNADSQAYLGEKLDAAYDDSKGAFWSNVDVAKKMLQC 180 M+G GV+QN TRAYAFWALAA++G+A++QAYLG KL+A YDD+ G+FW N +A +ML+C Sbjct: 121 MNGTGVQQNATRAYAFWALAANLGDAEAQAYLGGKLNATYDDANGSFWGNKSIALQMLRC 180 Query: 181 AIAQSNGAAALQVGATLSVLSDSRGEIDGRAITLLHDGVKWGSRLSAVLLFAAF-DSGEN 239 + AQ N A+L +G +L+V G+ + A+ +LHDGV++GS+ SA L A+F E Sbjct: 181 SYAQENAEASLNLGVSLNV----NGKYED-ALNILHDGVRFGSKGSANYLAASFLIHTEL 235 Query: 240 PAQLRDRDRAERYQAINNLLRLNPDLRLPNLDKVLPLPPAVLPYWDGEKQTLIDGAKPVK 299 Q D+DRAERY+AI +LLRLNPDLRLPNLDKVLPLPPAVLPYWDG+KQTLIDGAKPVK Sbjct: 236 TGQHVDQDRAERYKAIGDLLRLNPDLRLPNLDKVLPLPPAVLPYWDGDKQTLIDGAKPVK 295 Query: 300 AVSPDDIKPSPASLRQGRAHIPDGFVLPDEPQGGHLIQHLHTDTIISGFWLAQLAKPFTP 359 S DDIKPSPASLRQGRAHIPDG VLPDEPQGGHLIQHLHTD IISGFWLAQLAKP+TP Sbjct: 296 TASLDDIKPSPASLRQGRAHIPDGLVLPDEPQGGHLIQHLHTDAIISGFWLAQLAKPYTP 355 Query: 360 KQVEWNAAQVPMYYALGESFTLPADITKESGVLRFHYLGTPVAKPLAAQHVPDWRVPQGV 419 KQV WNAAQVPMYYALGESFT P DITK+ GVLRFHYLGTP+ K LA ++VPDWRVPQGV Sbjct: 356 KQVAWNAAQVPMYYALGESFTAPEDITKDDGVLRFHYLGTPIPKSLAERYVPDWRVPQGV 415 Query: 420 LREIPVPSRELRSSGLLPAPATGIWHGEVDPSHPLAKVFNQWTRQAYVEEGQSFPDPRDR 479 LRE+PVPSRELRSSGLLPAPATGIWHG +DP+H L+KVFN WTRQAYVEEGQSFPDPR+R Sbjct: 416 LREVPVPSRELRSSGLLPAPATGIWHGTIDPAHSLSKVFNLWTRQAYVEEGQSFPDPRER 475 Query: 480 GLDISPKDIQWQWLDQANQPLPSGRKDITIRNFDPADTTKDQ 521 GLDISPKDIQWQWLDQANQPLPSGRKDITIRNFDPADT K+ Sbjct: 476 GLDISPKDIQWQWLDQANQPLPSGRKDITIRNFDPADTAKNH 517 >gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 subfamily [Herbaspirillum seropedicae SmR1] Length = 517 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/519 (72%), Positives = 437/519 (84%), Gaps = 6/519 (1%) Query: 1 MKDLPRNMPLRAFDPHRKDFSCSYEAQAEPPVDPQAERWFLEGLAATSNDLWPDEKNYEN 60 M LPRNM L+AFDPHRK+F C+YE +E P++ +AE WF EGLAATS DLWPD+++Y Sbjct: 3 MHKLPRNMALKAFDPHRKEFPCNYEKYSETPLNEEAETWFREGLAATSFDLWPDDRDYVK 62 Query: 61 AADLWKRAAEKKYWKAMLNLASLYAYGLGINQDTEQAVQLVEEVMRMGIPKAFDLMGSYH 120 AA LW ++AE+K+W+AMLNLASLY G G+ +DTE+AV LVEEVM+MGIP+AFD MG+ H Sbjct: 63 AAKLWSKSAEEKHWQAMLNLASLYIQGKGVGKDTERAVSLVEEVMKMGIPRAFDFMGTLH 122 Query: 121 MDGIGVEQNPTRAYAFWALAADMGNADSQAYLGEKLDAAYDDSKGAFWSNVDVAKKMLQC 180 ++G GV Q+ TRAYAFW+LAA+MG+AD+QAYLGE+L+A+ DD W N +A K+++C Sbjct: 123 INGTGVRQDATRAYAFWSLAAEMGSADAQAYLGERLNASRDDPARETWGNKALAYKLMEC 182 Query: 181 AIAQSNGAAALQVGATLSVLSDSRGEIDGRAITLLHDGVKWGSRLSAVLLFAAFDSGENP 240 A AQ NG AA +G +L + D + RA+ +LHDGVK+GS SA+ L +F +G+ Sbjct: 183 AHAQENGRAASILGLSLGLDGDQQ-----RALNILHDGVKFGSEKSAIFLAVSFRAGDAT 237 Query: 241 AQLR-DRDRAERYQAINNLLRLNPDLRLPNLDKVLPLPPAVLPYWDGEKQTLIDGAKPVK 299 AQ + D+DR +RY AI +LLRLNPDLRLPNLDKVLPLPPA+LPYWDG+KQTLIDGAKPVK Sbjct: 238 AQHQVDQDRGDRYGAIAHLLRLNPDLRLPNLDKVLPLPPAILPYWDGDKQTLIDGAKPVK 297 Query: 300 AVSPDDIKPSPASLRQGRAHIPDGFVLPDEPQGGHLIQHLHTDTIISGFWLAQLAKPFTP 359 S DIKPSPASLRQGRAHIPDG VLPDEPQGGHLIQHLHTD IISGFWLAQLAKP+TP Sbjct: 298 TASLADIKPSPASLRQGRAHIPDGLVLPDEPQGGHLIQHLHTDAIISGFWLAQLAKPYTP 357 Query: 360 KQVEWNAAQVPMYYALGESFTLPADITKESGVLRFHYLGTPVAKPLAAQHVPDWRVPQGV 419 KQV WNAAQVPMYYALGESFT P DITKESGVLRFHYLGTP+ K LA +HVPDWRVPQGV Sbjct: 358 KQVAWNAAQVPMYYALGESFTPPEDITKESGVLRFHYLGTPIPKSLAERHVPDWRVPQGV 417 Query: 420 LREIPVPSRELRSSGLLPAPATGIWHGEVDPSHPLAKVFNQWTRQAYVEEGQSFPDPRDR 479 LRE+PVPSRELRSSGLLPAPATGIWHG +DP+HPL+KVFN WTRQAYVEEGQSFPDPR+R Sbjct: 418 LREVPVPSRELRSSGLLPAPATGIWHGTIDPAHPLSKVFNLWTRQAYVEEGQSFPDPRER 477 Query: 480 GLDISPKDIQWQWLDQANQPLPSGRKDITIRNFDPADTT 518 GL+ISPKDIQWQWLDQAN PLPSGRKDI IRNF PA +T Sbjct: 478 GLEISPKDIQWQWLDQANLPLPSGRKDIIIRNFSPAVST 516 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,815,211 Number of extensions: 83274 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 2 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)