BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0224.p (546 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 sub... 802 0.0 gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 sub... 797 0.0 >gi|300309590|ref|YP_003773682.1| TPR repeat containing, SEL1 subfamily [Herbaspirillum seropedicae SmR1] Length = 518 Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/516 (73%), Positives = 441/516 (85%) Query: 29 MQHLPRNMKLIAFDPHQTEFSCQYEKNQEPQVNDEAEQWFREGLAATSYDLWPDDRDYEK 88 M RNM L AFDPH EFSC+YEK+ EP ++++AE WFREG+A TS DLWPDDRDY++ Sbjct: 1 MNDFTRNMPLAAFDPHSREFSCKYEKDSEPILDEQAEDWFREGMAVTSNDLWPDDRDYKR 60 Query: 89 AATLWKKAAEKNHWRAMLNLATLHLRGAGVERSSERAVQMVEKVMLLGVPKAFDLMGTYH 148 AA+LWKKAA+KNHW+AMLNLA L+L G G+ R +E+AV +VE M +GVP+A++LMG YH Sbjct: 61 AASLWKKAAQKNHWKAMLNLAGLYLDGRGILRDTEQAVVLVEDAMKMGVPRAYELMGRYH 120 Query: 149 MNGTGVKQDATRAYAFWWHAANMGNSDALAYLGDKLNASYDDPKGAFWGNRSMALQMMEC 208 MNGTGV+Q+ATRAYAFW AAN+G+++A AYLG KLNA+YDD G+FWGN+S+ALQM+ C Sbjct: 121 MNGTGVQQNATRAYAFWALAANLGDAEAQAYLGGKLNATYDDANGSFWGNKSIALQMLRC 180 Query: 209 GYKQENGNAAYLLGHELSFHKQYERALHILHDGVKFGSEDSANKLFVEFDGGRKLVNKFL 268 Y QEN A+ LG L+ + +YE AL+ILHDGV+FGS+ SAN L F +L + + Sbjct: 181 SYAQENAEASLNLGVSLNVNGKYEDALNILHDGVRFGSKGSANYLAASFLIHTELTGQHV 240 Query: 269 DKDRADRYAAIADMLRLNPDLRLPNLDKVLPLPPAILPYWDGDKQTLIDGAKPVKTASLT 328 D+DRA+RY AI D+LRLNPDLRLPNLDKVLPLPPA+LPYWDGDKQTLIDGAKPVKTASL Sbjct: 241 DQDRAERYKAIGDLLRLNPDLRLPNLDKVLPLPPAVLPYWDGDKQTLIDGAKPVKTASLD 300 Query: 329 DIKPSPASLRQGRAHIPDGFTLPDEPQGGHLIQHPNTDVLISGFWLAQLAKPFTPRQVAW 388 DIKPSPASLRQGRAHIPDG LPDEPQGGHLIQH +TD +ISGFWLAQLAKP+TP+QVAW Sbjct: 301 DIKPSPASLRQGRAHIPDGLVLPDEPQGGHLIQHLHTDAIISGFWLAQLAKPYTPKQVAW 360 Query: 389 NAAQVPMHYDKGESFNTPDDITKESSVLRFHYLGTPVPKAPAARHVPDWRVPQGVLREVP 448 NAAQVPM+Y GESF P+DITK+ VLRFHYLGTP+PK+ A R+VPDWRVPQGVLREVP Sbjct: 361 NAAQVPMYYALGESFTAPEDITKDDGVLRFHYLGTPIPKSLAERYVPDWRVPQGVLREVP 420 Query: 449 VPSRDLRSTGLLPAPATGIWHGSIDPAHPLAKVFNQWTRQAYVEEGQAFPDPRDRGLDIS 508 VPSR+LRS+GLLPAPATGIWHG+IDPAH L+KVFN WTRQAYVEEGQ+FPDPR+RGLDIS Sbjct: 421 VPSRELRSSGLLPAPATGIWHGTIDPAHSLSKVFNLWTRQAYVEEGQSFPDPRERGLDIS 480 Query: 509 PKDIEWQWLDQTNQPLPSGRKGITIHNFIPADTAGN 544 PKDI+WQWLDQ NQPLPSGRK ITI NF PADTA N Sbjct: 481 PKDIQWQWLDQANQPLPSGRKDITIRNFDPADTAKN 516 >gi|300309588|ref|YP_003773680.1| TPR repeat containing, SEL1 subfamily [Herbaspirillum seropedicae SmR1] Length = 517 Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/512 (73%), Positives = 430/512 (83%) Query: 28 IMQHLPRNMKLIAFDPHQTEFSCQYEKNQEPQVNDEAEQWFREGLAATSYDLWPDDRDYE 87 M LPRNM L AFDPH+ EF C YEK E +N+EAE WFREGLAATS+DLWPDDRDY Sbjct: 2 FMHKLPRNMALKAFDPHRKEFPCNYEKYSETPLNEEAETWFREGLAATSFDLWPDDRDYV 61 Query: 88 KAATLWKKAAEKNHWRAMLNLATLHLRGAGVERSSERAVQMVEKVMLLGVPKAFDLMGTY 147 KAA LW K+AE+ HW+AMLNLA+L+++G GV + +ERAV +VE+VM +G+P+AFD MGT Sbjct: 62 KAAKLWSKSAEEKHWQAMLNLASLYIQGKGVGKDTERAVSLVEEVMKMGIPRAFDFMGTL 121 Query: 148 HMNGTGVKQDATRAYAFWWHAANMGNSDALAYLGDKLNASYDDPKGAFWGNRSMALQMME 207 H+NGTGV+QDATRAYAFW AA MG++DA AYLG++LNAS DDP WGN+++A ++ME Sbjct: 122 HINGTGVRQDATRAYAFWSLAAEMGSADAQAYLGERLNASRDDPARETWGNKALAYKLME 181 Query: 208 CGYKQENGNAAYLLGHELSFHKQYERALHILHDGVKFGSEDSANKLFVEFDGGRKLVNKF 267 C + QENG AA +LG L +RAL+ILHDGVKFGSE SA L V F G Sbjct: 182 CAHAQENGRAASILGLSLGLDGDQQRALNILHDGVKFGSEKSAIFLAVSFRAGDATAQHQ 241 Query: 268 LDKDRADRYAAIADMLRLNPDLRLPNLDKVLPLPPAILPYWDGDKQTLIDGAKPVKTASL 327 +D+DR DRY AIA +LRLNPDLRLPNLDKVLPLPPAILPYWDGDKQTLIDGAKPVKTASL Sbjct: 242 VDQDRGDRYGAIAHLLRLNPDLRLPNLDKVLPLPPAILPYWDGDKQTLIDGAKPVKTASL 301 Query: 328 TDIKPSPASLRQGRAHIPDGFTLPDEPQGGHLIQHPNTDVLISGFWLAQLAKPFTPRQVA 387 DIKPSPASLRQGRAHIPDG LPDEPQGGHLIQH +TD +ISGFWLAQLAKP+TP+QVA Sbjct: 302 ADIKPSPASLRQGRAHIPDGLVLPDEPQGGHLIQHLHTDAIISGFWLAQLAKPYTPKQVA 361 Query: 388 WNAAQVPMHYDKGESFNTPDDITKESSVLRFHYLGTPVPKAPAARHVPDWRVPQGVLREV 447 WNAAQVPM+Y GESF P+DITKES VLRFHYLGTP+PK+ A RHVPDWRVPQGVLREV Sbjct: 362 WNAAQVPMYYALGESFTPPEDITKESGVLRFHYLGTPIPKSLAERHVPDWRVPQGVLREV 421 Query: 448 PVPSRDLRSTGLLPAPATGIWHGSIDPAHPLAKVFNQWTRQAYVEEGQAFPDPRDRGLDI 507 PVPSR+LRS+GLLPAPATGIWHG+IDPAHPL+KVFN WTRQAYVEEGQ+FPDPR+RGL+I Sbjct: 422 PVPSRELRSSGLLPAPATGIWHGTIDPAHPLSKVFNLWTRQAYVEEGQSFPDPRERGLEI 481 Query: 508 SPKDIEWQWLDQTNQPLPSGRKGITIHNFIPA 539 SPKDI+WQWLDQ N PLPSGRK I I NF PA Sbjct: 482 SPKDIQWQWLDQANLPLPSGRKDIIIRNFSPA 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,853,115 Number of extensions: 84296 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 2 Length of query: 546 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 456 Effective length of database: 1,193,720 Effective search space: 544336320 Effective search space used: 544336320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)