BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0221.p (227 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309585|ref|YP_003773677.1| amino acid ABC transporter perm... 386 e-109 gi|300313166|ref|YP_003777258.1| amino acid ABC transporter perm... 258 3e-70 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 231 4e-62 gi|300310827|ref|YP_003774919.1| amino acid ABC transporter perm... 205 2e-54 gi|300313536|ref|YP_003777628.1| amino acid ABC transporter perm... 199 1e-52 >gi|300309585|ref|YP_003773677.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 386 bits (991), Expect = e-109, Method: Compositional matrix adjust. Identities = 202/227 (88%), Positives = 213/227 (93%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGY 60 MHYEFDFASVAAHW LLLQGAW+T+QLSFLATLLGF+LG CAVARGSRHGWL AAV GY Sbjct: 1 MHYEFDFASVAAHWPLLLQGAWTTVQLSFLATLLGFVLGAACAVARGSRHGWLRAAVSGY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQ 120 VELIRNTPLLIQCYFLIFGLSSVG+TMP+MAGAT+ALVINIGAYSCEIVRAG+ESI HGQ Sbjct: 61 VELIRNTPLLIQCYFLIFGLSSVGVTMPIMAGATLALVINIGAYSCEIVRAGLESIHHGQ 120 Query: 121 IEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EAA CLGLSP QV HVVL PAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV Sbjct: 121 LEAASCLGLSPAQVFWHVVLLPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 Query: 181 QSDTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAFTRRRKLGTPL 227 QSDTFRNFEVFL+LW YLAL+CLMRAGFW+LGQL FTRRRKLGTPL Sbjct: 181 QSDTFRNFEVFLLLWAAYLALACLMRAGFWLLGQLVFTRRRKLGTPL 227 >gi|300313166|ref|YP_003777258.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 258 bits (658), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 131/227 (57%), Positives = 164/227 (72%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGY 60 M+Y FDF SV A+W LL GAW TIQLS L+ +LGF +G +CA+A SR + V Y Sbjct: 1 MNYTFDFMSVFANWDRLLMGAWLTIQLSALSIVLGFAVGTLCAIAGKSRLALVRGLVLAY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQ 120 VE+IRNTPLL+Q + + FGL+S+G + A +AL +N+GAY+ EI+RAGI SI GQ Sbjct: 61 VEIIRNTPLLVQVFLVFFGLASIGWKLSAETAAVIALTVNVGAYTTEIMRAGINSIHPGQ 120 Query: 121 IEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 IEAA CLG+S V HVVL PAVERV+P+LTSQF+L+MLASSI S + AEEL AN V Sbjct: 121 IEAAECLGMSRFHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTATANLV 180 Query: 181 QSDTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAFTRRRKLGTPL 227 QS+TFR+FEV+ V+ V YL LS L R FW + Q+AF R+RKLGT L Sbjct: 181 QSETFRSFEVYAVIAVAYLVLSFLFRGAFWAISQIAFVRKRKLGTNL 227 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 231 bits (589), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 107/217 (49%), Positives = 156/217 (71%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGY 60 M++ DF+ +A +W + L GAW T++++ LA ++G +G+ A A+ S H WL Y Sbjct: 1 MNFSLDFSPLAPYWPVFLHGAWLTLKMTTLAVIVGVAIGIFVAFAKNSPHRWLARGCSAY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQ 120 +E++RNTP L+Q + L FGL+S+GI MP A A +A++INI AY+ EI+RAG++S+ GQ Sbjct: 61 IEVVRNTPFLVQIFLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQ 120 Query: 121 IEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 IEAA CLGLS ++ HV+LQPA+ERV+PALTSQF+LMM AS++ S + AEEL +AN V Sbjct: 121 IEAAQCLGLSVWRIRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTV 180 Query: 181 QSDTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAF 217 QSDTFR+ E +LV+ LYL L+ L++ + +G+ F Sbjct: 181 QSDTFRSLETYLVVAALYLVLAILVKLVAYAIGETIF 217 >gi|300310827|ref|YP_003774919.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 231 Score = 205 bits (522), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 112/226 (49%), Positives = 156/226 (69%), Gaps = 4/226 (1%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVA--RGSRHGWLCAAVG 58 M Y+F FA + H LL GA TI+LS L+ + G +G+ A+ GS+ L AV Sbjct: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSKPARL--AVT 58 Query: 59 GYVELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQH 118 YVELIR+TP L+Q + + FGL S+G+ + A +A+ +N+GAYS EIVRAG+ +I Sbjct: 59 SYVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHP 118 Query: 119 GQIEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVAN 178 QIEAA L ++ QV+RHVVL PA+E+V+PAL SQF LMMLASSI+S++ AEEL AN Sbjct: 119 SQIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATAN 178 Query: 179 RVQSDTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAFTRRRKLG 224 + ++TFR+FE++LV+ VLY+ L+ L R FW++G + F RRR+LG Sbjct: 179 LLDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRRLG 224 >gi|300313536|ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 223 Score = 199 bits (507), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 147/221 (66%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGY 60 M Y+FDF S + ++++G +TI+L + +LG +G+ A AR GWL V GY Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQ 120 VE+IRNTP L+Q +F+ FGL S+ I + + A +A+VIN+GAYS EI+RAG+++I GQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 IEAA L +S +Q+ RH++L+PA++++WPAL+SQ V++ML S++ S + EEL AN + Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QSDTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAFTRRR 221 Q FR FE ++V +YL L+ L+R ++G T RR Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITARR 221 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.330 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 670,842 Number of extensions: 24458 Number of successful extensions: 152 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 19 Length of query: 227 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 145 Effective length of database: 1,231,600 Effective search space: 178582000 Effective search space used: 178582000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)