BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0219.p (242 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPa... 438 e-124 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 322 1e-89 gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPa... 318 2e-88 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 309 1e-85 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 282 2e-77 >gi|300309583|ref|YP_003773675.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 438 bits (1126), Expect = e-124, Method: Compositional matrix adjust. Identities = 212/242 (87%), Positives = 226/242 (93%) Query: 1 MHTIVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ 60 MHT+VELQ VHKRFG+N VLRGVSF+VARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ Sbjct: 1 MHTVVELQGVHKRFGSNTVLRGVSFQVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ 60 Query: 61 ISVCGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQELA 120 ISVCGHA+H LDLR LRRDVGIVFQ YNLF HLTVLQNITLGPTAVKR+ +AQ LA Sbjct: 61 ISVCGHALHAAGLDLRGLRRDVGIVFQGYNLFPHLTVLQNITLGPTAVKRMPADQAQTLA 120 Query: 121 RQVLERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEVLK 180 +QVL RVGL DKA AYPEQLSGGQQQRVAIARSLA+QPQLMLFDEVTSALDPELTGEVLK Sbjct: 121 QQVLARVGLADKAGAYPEQLSGGQQQRVAIARSLALQPQLMLFDEVTSALDPELTGEVLK 180 Query: 181 IMEQMAAEGMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGPDILDSPATPELRNFVGT 240 +MEQMA+EGMTMILVTHEM+FARRVADQVIFMHQGQVWEQGGP+ILD+P TPELR+FVGT Sbjct: 181 VMEQMASEGMTMILVTHEMAFARRVADQVIFMHQGQVWEQGGPEILDAPVTPELRSFVGT 240 Query: 241 GL 242 GL Sbjct: 241 GL 242 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 322 bits (826), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 158/244 (64%), Positives = 195/244 (79%), Gaps = 2/244 (0%) Query: 1 MHTIVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQ 60 M IV+++ +HK FG+N VL GVS V +G++VAIIGKSGSGKST LRC+N LE++DAG Sbjct: 1 MSAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 Query: 61 ISVCGHAVH-TTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQEL 119 I VCGH +H +L+LR LR+ VGIVFQSYNLF HLTV +NITL T +K+++ +A+ + Sbjct: 61 IQVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTI 120 Query: 120 ARQVLERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEVL 179 A +VL+ VGL +K AYPEQLSGGQ QRVAIARSLAM P+LMLFDEVTSALDPELT EVL Sbjct: 121 AHKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 Query: 180 KIMEQMAAEGMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGPDILDS-PATPELRNFV 238 K+ME +A GMTM+LVTHEM+FAR++AD ++FMHQGQVWE G PD L S P T EL+ FV Sbjct: 181 KVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFV 240 Query: 239 GTGL 242 + L Sbjct: 241 SSDL 244 >gi|300313887|ref|YP_003777979.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 318 bits (815), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 159/240 (66%), Positives = 194/240 (80%) Query: 3 TIVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQIS 62 IV+L V+K FG+N VL+GVSF+VARGE++AIIG SGSGKSTALRCI+RLE ID+G I Sbjct: 25 VIVKLDQVYKSFGDNQVLKGVSFEVARGEMIAIIGASGSGKSTALRCIDRLETIDSGSIE 84 Query: 63 VCGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQELARQ 122 V G V Q+DL LRR+VGIVFQSYNLF HL VL+N+ L VK+ AEA+ +A Sbjct: 85 VAGIRVDDPQVDLHKLRREVGIVFQSYNLFPHLNVLENVMLALRHVKQQDKAEARRVALA 144 Query: 123 VLERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEVLKIM 182 L +VGL +KA AYPEQLSGGQQQRVAIARSLAM P++MLFDEVTSALDP+LTGEVL++M Sbjct: 145 ALAQVGLDEKANAYPEQLSGGQQQRVAIARSLAMAPKVMLFDEVTSALDPQLTGEVLRVM 204 Query: 183 EQMAAEGMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGPDILDSPATPELRNFVGTGL 242 E +AA GMTM+LVTHEM+FA+RVAD++I+MHQG+VWE G ++LD P TPEL+ F+ L Sbjct: 205 EDLAANGMTMLLVTHEMNFAKRVADRIIYMHQGRVWEVGPGEMLDHPYTPELQAFLAADL 264 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 309 bits (791), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 154/239 (64%), Positives = 181/239 (75%), Gaps = 1/239 (0%) Query: 4 IVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 IVE+ + KRFG+N VL G+S V RG+VVAIIG+SGSGKST LRCIN LE ID G I+V Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 64 CGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQELARQV 123 GH + L LR+DVG+VFQ YNLF HLTV +NI L P VK+ A A+E A +V Sbjct: 63 AGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIKV 122 Query: 124 LERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEVLKIME 183 L++VGL K AYPEQLSGGQQQRVAIARSLAM+PQ+MLFDEVTSALDPELT EVLK+ME Sbjct: 123 LKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 Query: 184 QMAAEGMTMILVTHEMSFARRVADQVIFMHQGQVWE-QGGPDILDSPATPELRNFVGTG 241 ++A GMTM+LVTHEM FARRVAD +FMHQG+VWE + + P TPE R F+G G Sbjct: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFIGAG 241 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 282 bits (722), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 136/237 (57%), Positives = 179/237 (75%), Gaps = 1/237 (0%) Query: 4 IVELQAVHKRFGNNAVLRGVSFKVARGEVVAIIGKSGSGKSTALRCINRLEQIDAGQISV 63 ++ + V KRFG+N VL+G+S V GEV+AIIGKSGSGKST LRCIN LE ID G ISV Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 64 CGHAVHTTQLDLRALRRDVGIVFQSYNLFAHLTVLQNITLGPTAVKRLAPAEAQELARQV 123 G + ++L+LR LR VG++FQ +NLF HL+V +N+ + P VK ++ AEA + A+ Sbjct: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKAN 122 Query: 124 LERVGLGDKAQAYPEQLSGGQQQRVAIARSLAMQPQLMLFDEVTSALDPELTGEVLKIME 183 LE+VGLG K AYP+QLSGGQQQRVAIAR+L+M PQ +L DE+TSALDPEL EVL +M Sbjct: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 Query: 184 QMAAEGMTMILVTHEMSFARRVADQVIFMHQGQVWEQGGP-DILDSPATPELRNFVG 239 +A EGMT+++VTHEM FAR V ++++FMHQG+V E G P ++ +P TPEL+ F+G Sbjct: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFIG 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 754,096 Number of extensions: 30154 Number of successful extensions: 578 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 323 Number of HSP's successfully gapped: 147 Length of query: 242 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 159 Effective length of database: 1,226,865 Effective search space: 195071535 Effective search space used: 195071535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)