BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0217.p (391 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [H... 780 0.0 gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [H... 304 9e-84 gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [H... 271 7e-74 gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herba... 258 6e-70 gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Her... 250 1e-67 >gi|300309581|ref|YP_003773673.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 391 Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/391 (98%), Positives = 390/391 (99%) Query: 1 MDDVVIVAAQRTAIGKFGGSLSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVLTAG 60 MDDVVIVAAQRTAIGKFGG+LSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVLTAG Sbjct: 1 MDDVVIVAAQRTAIGKFGGALSKIAAADLGAQVIKALLAKTGIKPEAISEVILGQVLTAG 60 Query: 61 LGQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSA 120 LGQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSA Sbjct: 61 LGQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSA 120 Query: 121 SPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFAA 180 SPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFAA Sbjct: 121 SPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYNQYHMGITAENVAKKFEISREEQDAFAA 180 Query: 181 ASQNKAEAAQKAGRFKDEIVPIEIKGKKETVVFDTDEFVKHGVTAEALAALRPAFDKAGT 240 ASQNKAEAAQKAG+FKDEIVPIEIKGKKETVVFDTDEFVKHGVTAE+LA LRPAFDKAGT Sbjct: 181 ASQNKAEAAQKAGKFKDEIVPIEIKGKKETVVFDTDEFVKHGVTAESLATLRPAFDKAGT 240 Query: 241 VTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPVPASQLTL 300 VTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPVPASQLTL Sbjct: 241 VTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPVPASQLTL 300 Query: 301 KKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIALGHPIGASGCRVLVT 360 KKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIALGHPIGASGCRVLVT Sbjct: 301 KKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIALGHPIGASGCRVLVT 360 Query: 361 LLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 LLHEMVRRDAKKGLASLCIGGGMGVALAVER Sbjct: 361 LLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 >gi|300310259|ref|YP_003774351.1| acetyl-CoA acetyltransferase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 304 bits (778), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 176/396 (44%), Positives = 242/396 (61%), Gaps = 8/396 (2%) Query: 2 DDVVIVAAQRTAIGKFGGSLSKIAAADLGAQVIKALLAKTGIKPEAISE---VILGQVLT 58 D VVIV+A RTA+G F G+L+ + A LGA I A L + + I++ V +G VL Sbjct: 4 DPVVIVSAARTAMGSFQGALADLPAPHLGAVAISAALQRAQLSAAQIAQIEQVWMGCVLQ 63 Query: 59 AGLGQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENM 118 AGLGQ PARQ+ +++GLP V + KVCGS ++AV L +I G A +V+AGG E+M Sbjct: 64 AGLGQAPARQAALRAGLPQTVACATLNKVCGSAMQAVMLGHDSILAGSASMVVAGGMESM 123 Query: 119 SASPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVY-NQYH---MGITAENVAKKFEISREE 174 S +P++L +R G+R+G +L D M +DGL D Y +QY MG AE+ A +F +R + Sbjct: 124 SNAPYLLPKARRGYRLGHDRLLDHMFLDGLEDAYSDQYRGRLMGTFAEDCASEFGFTRAQ 183 Query: 175 QDAFAAASQNKAEAAQKAGRFKDEIVPIEIKGKKETVVFDTDEFVKHGVTAEALAALRPA 234 QDAFA S +A A G F E+VP+++ GKK +VV DE V E +A L+PA Sbjct: 184 QDAFAVQSTLRARQAISGGGFDWEVVPVDVAGKKGSVVISQDEG-PMAVNLERIATLKPA 242 Query: 235 FDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPVP 294 F GTVTA N+S I+DGAAA+++ A + GL LA+I ++S P P+ Sbjct: 243 FSVDGTVTAANSSSISDGAAALLLMRESAALKQGLTPLARILGHASYAGAPEKFPTAPIG 302 Query: 295 ASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIALGHPIGASG 354 + K G DL EINEAFA +A ++++ D KINV+GGA ALGHPIGASG Sbjct: 303 VLRKIFAKTGLDAASTDLFEINEAFAVVPMAASRELDIDMEKINVHGGACALGHPIGASG 362 Query: 355 CRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVE 390 R++V+LL + R K G+ASLCIGGG A+A+E Sbjct: 363 ARIIVSLLGALKARGLKTGIASLCIGGGEATAIALE 398 >gi|300313287|ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 271 bits (693), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 168/400 (42%), Positives = 246/400 (61%), Gaps = 10/400 (2%) Query: 1 MDDVVIVAAQRTAIGKFGGSLSKIAAADLGAQVIKALLAKTG-IKPEAISEVILGQVLTA 59 M DV I A RT IG++GG+L + A DLGA ++AL+ + + +A+ +VI G A Sbjct: 1 MKDVFICDAIRTPIGRYGGALKDVRADDLGAVPLRALMERNPQVDWKAVDDVIYGCANQA 60 Query: 60 GL-GQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENM 118 G +N AR S++ +GLP VP + ++CGSG+ A+ AA+AI+ G+ Q++IAGG E+M Sbjct: 61 GEDNRNVARMSLLLAGLPQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESM 120 Query: 119 SASPHVLNNSRDGFRMGDAKLTDTMI----VDGLW-DVYNQYHMGITAENVAKKFEISRE 173 + +P V+ + F A + DT I V+ L Y M TAENVA F++SR Sbjct: 121 TRAPFVMGKADSAFSR-QAAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRA 179 Query: 174 EQDAFAAASQNKAEAAQKAGRFKDEIVPIEIKGKKETVVFDTDEFVKHGVTAEALAALRP 233 +QD FA SQ KA AAQ G EIVP+ I KK + T + + EALA L+ Sbjct: 180 DQDQFAVRSQAKAAAAQANGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLKG 239 Query: 234 AFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMGPV 293 G+VTAGNASG+NDGA A+++ SA+ + L A+I ++AG+ P IMGMGP Sbjct: 240 VVKPDGSVTAGNASGVNDGACALLLASAEAVEKYQLKPRARILGMATAGVAPRIMGMGPA 299 Query: 294 PASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGW--DTSKINVNGGAIALGHPIG 351 PAS+ L + G T +D++E+NEAFA+Q +AV +++G D +++N NGGAIALGHP+G Sbjct: 300 PASKKVLAQLGMTIDQMDVIELNEAFASQGLAVLRELGVADDDARVNPNGGAIALGHPLG 359 Query: 352 ASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 SG R++ T +++ R + L ++CIG G G+A+ +ER Sbjct: 360 MSGARLVTTATYQLERTGGRYALCTMCIGVGQGIAMVIER 399 >gi|300313421|ref|YP_003777513.1| 3-oxoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] Length = 401 Score = 258 bits (659), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 166/402 (41%), Positives = 241/402 (59%), Gaps = 17/402 (4%) Query: 3 DVVIVAAQRTAIGKFGGSLSKIAAADLGAQVIKALLAKT-GIKPEAISEVILGQVLTAGL 61 + +I A RT G++GG+L + A DL A I++L+ + G+ + +++ G AG Sbjct: 2 EALICDAIRTPFGRYGGALGAVRADDLAAAPIRSLMERNPGVDWSRVEDILYGCANQAGE 61 Query: 62 -GQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQENMSA 120 +N AR + + +GLP VP V ++CGS L AV +AA+AI+ G+ Q++IAGG E+M+ Sbjct: 62 DNRNVARMAGLLAGLPIAVPGSTVNRLCGSSLDAVGMAARAIKSGEVQLMIAGGVESMTR 121 Query: 121 SPHVLNNSRDGFRMGDAKLTDTMIVDGLWDVYN-----QY---HMGITAENVAKKFEISR 172 +P V+ + F A + DT I W N QY M TAENVA F+I+R Sbjct: 122 APFVMGKAESAFAR-SAAIFDTTIG---WRFVNPLMKAQYGIDSMPETAENVATDFQINR 177 Query: 173 EEQDAFAAASQNKAEAAQKAGRFKDEIVPIEIKGKK-ETVVFDTDEFVKHGVTAEALAAL 231 +QDAFA SQ + AAQ AG F EI P+ I KK + +V TDE + T LA L Sbjct: 178 ADQDAFALRSQQRWAAAQAAGFFAGEIAPLTIPQKKGDPLVVTTDEHPRPDTTLATLAKL 237 Query: 232 RPAFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDPSIMGMG 291 + GTVTAGNASG+NDGA A+++ S K A L A++ ++AG+ P IMG G Sbjct: 238 KGVVRPDGTVTAGNASGVNDGACALLLASPKAADLYRLKPRARVLGMATAGVAPRIMGFG 297 Query: 292 PVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGW--DTSKINVNGGAIALGHP 349 P PA + L + G T +D++E+NEAFAAQ +AV + +G D + +N NGGAIA+GHP Sbjct: 298 PAPAVRKVLAQVGLTLAQMDVIELNEAFAAQGLAVMRDLGLPDDAAHVNPNGGAIAIGHP 357 Query: 350 IGASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 +GASG R++ T ++++ R + L ++CIG G G+AL +ER Sbjct: 358 LGASGARLVTTAINQLERSGGRYALCTMCIGVGQGIALVIER 399 >gi|300309598|ref|YP_003773690.1| acetyl-CoA acyltransferase [Herbaspirillum seropedicae SmR1] Length = 398 Score = 250 bits (638), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 157/406 (38%), Positives = 229/406 (56%), Gaps = 28/406 (6%) Query: 1 MDDVVIVAAQRTAIGKFG-GSLSKIAAADLGAQVIKALLAKT-GIKPEAISEVILGQVLT 58 + D IVAA RT IGK G DL + I++ +A+ G+ P+ I + I+G Sbjct: 5 LQDAYIVAATRTPIGKAPRGMFKNTRPDDLLVRAIQSAVAQVPGLDPKLIEDAIVGCSFP 64 Query: 59 AGL-GQNPARQSVIKSGLPDMVPAFVVGKVCGSGLKAVQLAAQAIRCGDAQIVIAGGQEN 117 G G N AR +V+ +GLP+ + + + C SG+ A+ +AA IR G+A ++IA G E+ Sbjct: 65 EGAQGLNMARNAVLLAGLPNTIGGVTINRYCASGITAIAMAADRIRVGEADVMIAAGAES 124 Query: 118 MSASPHVLNNSRDGFRMGDAKLTDTMIVDGLWD--VYNQYHMGITAENVAKKFEISREEQ 175 MS P + GF ++ ++ D V Y MG+TAE VA+++++SRE Q Sbjct: 125 MSMVPMM------GFH-------PSININAFKDENVGMAYGMGLTAEKVAQQWKVSREAQ 171 Query: 176 DAFAAASQNKAEAAQKAGRFKDEIVPIEIKGK----------KETVVFDTDEFVKHGVTA 225 D F+ AS KA AAQ+AG F DE+ EI + +T DE + Sbjct: 172 DEFSLASHQKAIAAQEAGEFADEMTSFEIVERFPNLATGEIDVKTRTVSLDEGPRADSNL 231 Query: 226 EALAALRPAFDKAGTVTAGNASGINDGAAAVVVTSAKLAAELGLPVLAKIKAYSSAGLDP 285 ALA L+P F G+VTAGN+S +DGA A+++ S K+ + L LA+ +++ G+ P Sbjct: 232 AALAKLKPVFAAKGSVTAGNSSQTSDGAGALIIVSEKILKQFNLTPLARFVSFAVRGVPP 291 Query: 286 SIMGMGPVPASQLTLKKAGWTPQDLDLMEINEAFAAQAIAVNKQMGWDTSKINVNGGAIA 345 IMG+GP A LK G T +D +E+NEAFAAQA+AV +G D SK+N GGAIA Sbjct: 292 EIMGIGPKEAIPAALKAGGLTQDQIDWIELNEAFAAQALAVIGDLGLDPSKVNPMGGAIA 351 Query: 346 LGHPIGASGCRVLVTLLHEMVRRDAKKGLASLCIGGGMGVALAVER 391 LGHP+GA+G T +H + R++ K G+ ++C+G GMG A ER Sbjct: 352 LGHPLGATGAIRAATTIHALRRKNLKYGMVTMCVGTGMGAAGIFER 397 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,164,406 Number of extensions: 47976 Number of successful extensions: 224 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 6 Length of query: 391 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 304 Effective length of database: 1,207,925 Effective search space: 367209200 Effective search space used: 367209200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)