BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0216.p
         (391 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309580|ref|YP_003773672.1| phosphatidylserine/phosphatidyl...   758   0.0  
gi|300310445|ref|YP_003774537.1| phospholipase D family protein ...   131   1e-31

>gi|300309580|ref|YP_003773672.1|
           phosphatidylserine/phosphatidylglycerophosphate/
           cardiolipin synthase [Herbaspirillum seropedicae SmR1]
          Length = 387

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/387 (93%), Positives = 380/387 (98%)

Query: 5   LRHLTFTDGNQIALLHSGAGFYPALINAIETARVEIYLETYIFSLDETGLLVCEALQRAA 64
           +RHLTFTDGNQIALLHSGAGFYPALI+AI+ ARVEIYLETYIFSLD+TG+LVCEALQRAA
Sbjct: 1   MRHLTFTDGNQIALLHSGAGFYPALISAIDAARVEIYLETYIFSLDDTGVLVCEALQRAA 60

Query: 65  GRGVVVYVINDWLGTGRENTKKLHLALSAAGVQHRSFNPWFRRGVARSHRKLCVVDRQVA 124
           GRGVVVYVINDWLGTGRENT KLHLALSAAGVQHRSFNPWFRRGVARSHRKLCVVDRQVA
Sbjct: 61  GRGVVVYVINDWLGTGRENTNKLHLALSAAGVQHRSFNPWFRRGVARSHRKLCVVDRQVA 120

Query: 125 FVGGLNINDDMVSDRDHVTPLPAPRWDFAVSIIGPLVQEVYREVQAQWLRVGHMKLKARW 184
           FVGGLNINDDMVSDRDH+TPLPAPRWDFAVSI+GPLVQE+YREVQAQWLRVGHMKLKARW
Sbjct: 121 FVGGLNINDDMVSDRDHMTPLPAPRWDFAVSILGPLVQEIYREVQAQWLRVGHMKLKARW 180

Query: 185 RNFKRLRHGHPGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARETAFLANPYFAPGR 244
           RNFKRLRHGH GPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARE+AFLANPYFAPGR
Sbjct: 181 RNFKRLRHGHSGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARESAFLANPYFAPGR 240

Query: 245 KMRRALEEAALRGVKVTLLLGVGQFVMQDAVAHSFYPKLLRAGVRIVEYTHTELHAKVAV 304
           KMRRALEEAA+RGVKVTLLLGVGQF+MQDAVAHSFYPKLLRAGVRI+EYT TELHAKVAV
Sbjct: 241 KMRRALEEAAMRGVKVTLLLGVGQFMMQDAVAHSFYPKLLRAGVRIIEYTRTELHAKVAV 300

Query: 305 IDDKWSTVGSSNYDGLSLFVNQEANVVIQDAAFAGYLRQEIEAGAAHGRVVHLADFLHVP 364
           +DDKW+TVGSSNYDGLSLFVNQEANVV+QD AFAG+LRQEIEAGA  GRVVHLADF+HVP
Sbjct: 301 VDDKWATVGSSNYDGLSLFVNQEANVVVQDPAFAGFLRQEIEAGATQGRVVHLADFMHVP 360

Query: 365 WYKRAAYGAAFLLYRTVIHIITLGKDA 391
           WYKRAAYGAAFLLYRTVIHIITLGKDA
Sbjct: 361 WYKRAAYGAAFLLYRTVIHIITLGKDA 387


>gi|300310445|ref|YP_003774537.1| phospholipase D family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 472

 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 160/350 (45%), Gaps = 31/350 (8%)

Query: 13  GNQIALLHSGAGFYPALINAIETARVEIYLETYIFSLDETGLLVCEALQRAAGRGVVVYV 72
           GN++ LL  G   Y ++  AI+ AR  I +ETYI   DE G    + L     +GV V +
Sbjct: 95  GNKVTLLIDGPATYASMQQAIQAARYHINMETYIMEDDEVGRQFADLLIAMQNKGVQVNL 154

Query: 73  INDWLGTGRENTKKLHLALSAAGVQHRSFNPW----FRRG---VARSHRKLCVVDRQVAF 125
           + D +G      +     +  AG+Q   +NP      R+      R HRKL VVD + AF
Sbjct: 155 MYDSVG-ALNTPRTFFQPMIDAGIQVLEYNPLNPTQLRKDWEVNQRDHRKLLVVDGKTAF 213

Query: 126 VGGLNINDDMVSDRDHVTPLPAPR---------W-DFAVSIIGPLVQEVYREVQAQWLRV 175
           VGG+NI+    S     T    PR         W D  V I GP+  E  +     W + 
Sbjct: 214 VGGINISSVYSSGS-FSTRKKKPRVNAEGEQIPWRDTQVRIDGPVALEFQKLFVDTWNKQ 272

Query: 176 GHMKLKARWRNFKRLRHGHPGPVHDQTQAALVVRDNFRNRRTIQRAYLQALGRARETAFL 235
               L    R F  +      P  ++   A+    +      I   ++ A+  A +  +L
Sbjct: 273 RGPALGDH-RYFPTV-----APAGNEIVRAIGSSPD-DPYSVIYATFISAIQHAEKAIYL 325

Query: 236 ANPYFAPGRKMRRALEEAALRGVKVTLLL---GVGQFVMQDAVAHSFYPKLLRAGVRIVE 292
            N YF P  ++R +L++AA RGV V L+L        V+    + SFY +LL AG+RI E
Sbjct: 326 TNAYFVPDPQLRDSLKDAARRGVDVRLILPSHSDSSLVLY--ASRSFYQELLEAGIRIYE 383

Query: 293 YTHTELHAKVAVIDDKWSTVGSSNYDGLSLFVNQEANVVIQDAAFAGYLR 342
                LH+K A+ID  WST+GS+N D  S   NQE N VI    F   ++
Sbjct: 384 RQDALLHSKTALIDGVWSTIGSTNLDWRSFVYNQEINAVILSPQFGVQMK 433


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,279,557
Number of extensions: 54074
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 3
Length of query: 391
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,207,925
Effective search space: 367209200
Effective search space used: 367209200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)