BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0207.p
         (485 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309535|ref|YP_003773627.1| Na+/proline symporter protein [...   919   0.0  

>gi|300309535|ref|YP_003773627.1| Na+/proline symporter protein
           [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/484 (95%), Positives = 476/484 (98%)

Query: 1   MNALLWFVVLYWVISVGIGLYATRYVKSSKDYAVAGRALPMSVVTATVFATWFGSEAVLG 60
           MNALLWFVVLYWVISVGIGLYATR+VKSSKDYAVAGR+LPMSVVTATVFATWFGSEAVLG
Sbjct: 1   MNALLWFVVLYWVISVGIGLYATRFVKSSKDYAVAGRSLPMSVVTATVFATWFGSEAVLG 60

Query: 61  VSSTFLKDGLGGIVADPFGSSLCLILVGVFFAKRLYRMNLLTIGDYYKKRFGRAAEMLVT 120
           VSSTFLK+GLGGIVADPFGSSLCLILVG+FFAKRLYRMNLLTIGDYYKKRFGRAAEMLVT
Sbjct: 61  VSSTFLKEGLGGIVADPFGSSLCLILVGLFFAKRLYRMNLLTIGDYYKKRFGRAAEMLVT 120

Query: 121 ICIVISYLGWVAAQIKALGLVFNVVSGGYIPMHWGMIIGAGSVLIYTLMGGMWAVAITDF 180
           ICIVISYLGWVAAQIKALGLVFNVVSGGYIPMHWGMIIGAGSVLIYTLMGGMWAVAITDF
Sbjct: 121 ICIVISYLGWVAAQIKALGLVFNVVSGGYIPMHWGMIIGAGSVLIYTLMGGMWAVAITDF 180

Query: 181 LQMIIVVVGMLYIGYEVSGMVGGPGVVIAHAAEAGKFNFWPAAELKDVLWFFAAWITMML 240
           LQMIIVVVGMLYIGYEVSGMVGGPGVVIAHAAEAGKFNFWPAAELKDVLWFFAAWITMML
Sbjct: 181 LQMIIVVVGMLYIGYEVSGMVGGPGVVIAHAAEAGKFNFWPAAELKDVLWFFAAWITMML 240

Query: 241 GSIPQQDVFQRVMSSKNEKVARNASVLGGVIYFFFVFIPIFLAYSATLIDPAMVSRLLET 300
           GSIPQQDVFQRVMSSKNE VARNASVLGGVIYFFFVFIPIFLAYSATLIDP MVSRLLET
Sbjct: 241 GSIPQQDVFQRVMSSKNENVARNASVLGGVIYFFFVFIPIFLAYSATLIDPEMVSRLLET 300

Query: 301 DSQLVLPTLIMEKMPVFAQVMFFGALLSAIKSCASATLLAPSVTFTENVLKEIRPWKNDR 360
           DSQLVLPTLIMEKMPVFAQVMFFGALLSAI+SCASATLLAPSVTFTENVLKEIRPWK+DR
Sbjct: 301 DSQLVLPTLIMEKMPVFAQVMFFGALLSAIRSCASATLLAPSVTFTENVLKEIRPWKSDR 360

Query: 361 EFLFSMRAVVLLFTVGVTSLALNSQSSIYEMVENAYKVTLVAAFVPLAFGVYWQRSTRQG 420
           EFLFSMRAVVL+FT+GVTSLALNSQSSIYEMVENAYKVTLVAAFVPLAFGVYW R++RQG
Sbjct: 361 EFLFSMRAVVLVFTIGVTSLALNSQSSIYEMVENAYKVTLVAAFVPLAFGVYWPRASRQG 420

Query: 421 ALMAMVLGLVSWITLEYVAPDGLWPPQLAGLLFSIGGMVVGSLMPQVLAPVPPMVVATAE 480
           ALMAMVLGLVSWITLEYVAPDG WPPQLAGLLFSIGGMVVGSLMPQVLAP+PPM+   AE
Sbjct: 421 ALMAMVLGLVSWITLEYVAPDGFWPPQLAGLLFSIGGMVVGSLMPQVLAPMPPMMPTPAE 480

Query: 481 GSVQ 484
           GS Q
Sbjct: 481 GSAQ 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,475,666
Number of extensions: 62520
Number of successful extensions: 297
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 2
Length of query: 485
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,198,455
Effective search space: 474588180
Effective search space used: 474588180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)