BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0203.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309530|ref|YP_003773622.1| general secretion pathway prote...   256   7e-70

>gi|300309530|ref|YP_003773622.1| general secretion pathway protein
           [Herbaspirillum seropedicae SmR1]
          Length = 183

 Score =  256 bits (653), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 125/155 (80%), Positives = 135/155 (87%)

Query: 1   MRRSLLPSRRHPAFLFLQRGLARLRWILILTVLAVAAALLVPPLVARFNHDHSPQALAAE 60
           MRRSL PSRRHPAFLFLQRGLARLRWIL+LTVLAV AALLVPPLV RFNHDHSPQA AAE
Sbjct: 29  MRRSLQPSRRHPAFLFLQRGLARLRWILVLTVLAVGAALLVPPLVTRFNHDHSPQAQAAE 88

Query: 61  KDMQAIAAGLERYRQDNGRYPSAAQGLLALVIKPTRAPVPGNWQIGGYVDRLPRDPWGNS 120
           KDM+AIAAGLERYRQDNGRYPS  QGLLALVI+P R P+   WQ+GGYV+RLPRDPWGN 
Sbjct: 89  KDMKAIAAGLERYRQDNGRYPSTQQGLLALVIRPVREPLANGWQLGGYVERLPRDPWGNP 148

Query: 121 YQYGADDDGTSYELYSFGQAGPDGDPDGEDVLRQH 155
           YQY ADDDG SYEL+SFGQAGP+G  D + V+  H
Sbjct: 149 YQYQADDDGASYELFSFGQAGPEGGDDDDRVISLH 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 558,454
Number of extensions: 24027
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)