BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0201.p (511 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot... 806 0.0 gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294... 424 e-120 >gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/510 (80%), Positives = 447/510 (87%), Gaps = 2/510 (0%) Query: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI Sbjct: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 Query: 61 IGRNITYEQVKELSPPQEAAVWYEKAFEAGVPQAGLIFARLVLDHSEQFDSNTHARAIAA 120 IGRNITYEQVKELSPP+EAAVWYEKAFEAGVPQAGLIFARLVLD++ +FDSNTHARAIAA Sbjct: 61 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNTHARAIAA 120 Query: 121 LSLLASRDDHQAQWLLAQQMQRHGQPVVPGAAGS--AVEERLMQEAARAGIEQAQYALLD 178 LSLLASRDDH+AQWLLAQQMQRHGQP++PGAA + A E++LM EAARAGIE+AQYA+LD Sbjct: 121 LSLLASRDDHEAQWLLAQQMQRHGQPMLPGAAAASPAYEDKLMLEAARAGIEEAQYAVLD 180 Query: 179 KAWQQGPGDAFARGAAPLVARLFERNSGALAQLDKDADATGLVQLSAEEATLLLRYGQWL 238 KAWQQG +FARGA + RL R++ A+AQL+KD G VQLS EEATLLLRYGQW Sbjct: 181 KAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLSDEEATLLLRYGQWR 240 Query: 239 ARAQTPELTQLMRLFELAAVAGEIEARLELGLLCAKIDRAGNRVFMELGLANFKKALHWL 298 R +P+ +L LFELAA+ G +A LELGLLCAKIDR G R+FME GLANFKKALHWL Sbjct: 241 LRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFMEHGLANFKKALHWL 300 Query: 299 VLAGEGGSAPAWHALARIYSRSIYSQRNLQVAQQYLEKAAEAGLVEAQSELAQIFWRNRR 358 AGE G A WHALARIYSRSIYSQRNLQVAQ YLEKAA+AGLVEAQ ELAQ+ WR+RR Sbjct: 301 ERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVEAQCELAQVCWRHRR 360 Query: 359 DDPMHDVKALYWWQQAAAQGDAAALAALQPFTVEQQAQGWAQQARAQLSDKLRNSSPFLS 418 DDP++DVKALYWWQQAAAQG+ A AAL F + AQGWA QA+A L+DKLRNSSPFLS Sbjct: 361 DDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQALLTDKLRNSSPFLS 420 Query: 419 ARIELAAIFGLTKPEALLIDIKQADYGHCLVVDICAHHARSKRRLIAVQSEAQRAAINRV 478 ARIELAA FGLTKPEALLIDIK ADYGHCLVVDICAHHARSKRRLIAVQ++AQRA +NRV Sbjct: 421 ARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLIAVQTDAQRATLNRV 480 Query: 479 SRLFGDVDCGFSGPEGNYRQRQYRLRTAFP 508 SRLFGDVDCGF G EGNYRQRQYRLRT FP Sbjct: 481 SRLFGDVDCGFDGLEGNYRQRQYRLRTTFP 510 >gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294 [Herbaspirillum seropedicae SmR1] Length = 532 Score = 424 bits (1091), Expect = e-120, Method: Compositional matrix adjust. Identities = 269/519 (51%), Positives = 345/519 (66%), Gaps = 10/519 (1%) Query: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 MA RE+LA+I+AARAG++ AQL LG+RYL GG+GLP+S TAF+WL RAA+Q + DAWM+ Sbjct: 1 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML 60 Query: 61 IGRNITYEQVKELSPPQEAAVWYEKAFEAGVPQAGLIFARLVLDHSEQFDSNTHARAIAA 120 I +I YE V L+ PQEAA WYE+AFE G+ +AGL FARLVL+ + + + ARAI Sbjct: 61 IAEHIPYEVVVTLTRPQEAAQWYERAFEGGMTKAGLAFARLVLESAGEPGAELKARAIRV 120 Query: 121 LSLLASRDDHQAQWLLAQQMQRHGQPVVPGAAGSAVE---------ERLMQEAARAGIEQ 171 L ++A D AQWLLA+Q + +P A + ++ Q+AA AGIEQ Sbjct: 121 LQVVAREGDPDAQWLLARQGSQPAEPAASAAVAAPAPAPDLPPEDLQQWTQKAADAGIEQ 180 Query: 172 AQYALLDKAWQQGPGDAFARGAAPLVARLFERNSGALAQLDKDADATGLVQLSAEEATLL 231 AQ+AL D AWQQ F + A PL +L + +AQL+ A+A L + LL Sbjct: 181 AQHALADAAWQQADLIQFRQRAQPLADKLLRQYEALVAQLNGPAEALA-TALGPQNIVLL 239 Query: 232 LRYGQWLARAQTPELTQLMRLFELAAVAGEIEARLELGLLCAKIDRAGNRVFMELGLANF 291 R Q + +L Q +L ELAA+A + +A+L LGLL ++D G R F LG AN+ Sbjct: 240 RRLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPGLGSANY 299 Query: 292 KKALHWLVLAGEGGSAPAWHALARIYSRSIYSQRNLQVAQQYLEKAAEAGLVEAQSELAQ 351 KKA+ WL LAGE G A AW+ L+RIY + +SQRNL Q YLE+AAE G V AQ E Sbjct: 300 KKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAAQLECGI 359 Query: 352 IFWRNRRDDPMHDVKALYWWQQAAAQGDAAALAALQPFTVEQQAQGWAQQARAQLSDKLR 411 WRNRRD+ +DV+ALYW Q+AA+QGD A A L QA WA ARAQL+ + Sbjct: 360 GAWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQLTREQV 419 Query: 412 NSSPFLSARIELAAIFGLTKPEALLIDIKQADYGHCLVVDICAHHARSKRRLIAVQSEAQ 471 N+ PFL+ARIELA +FGLT+PEALLID+KQAD GHCL+VDI + +ARSKRRLI V++ Q Sbjct: 420 NAHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIMVENGEQ 479 Query: 472 RAAINRVSRLFGDVDCGFSGPEGNYRQRQYRLRTAFPEA 510 R A+NR+ RLF DVDCG SGPEGNYRQR YRL+T P++ Sbjct: 480 RGALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLPQS 518 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,521,544 Number of extensions: 61310 Number of successful extensions: 282 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 263 Number of HSP's successfully gapped: 2 Length of query: 511 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 422 Effective length of database: 1,198,455 Effective search space: 505748010 Effective search space used: 505748010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)