BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0198.p
         (458 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU AT...   860   0.0  
gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-bind...    97   3e-21

>gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU
           ATPase subunit [Herbaspirillum seropedicae SmR1]
          Length = 448

 Score =  860 bits (2222), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/448 (97%), Positives = 443/448 (98%)

Query: 11  MNMTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMIGPTGV 70
           MNMTPKEIVSELDKHVVGQARAKRAV+IALRNRWRRQQIEEPLRHEITPKNILMIGPTGV
Sbjct: 1   MNMTPKEIVSELDKHVVGQARAKRAVSIALRNRWRRQQIEEPLRHEITPKNILMIGPTGV 60

Query: 71  GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRT 130
           GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRT
Sbjct: 61  GKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRT 120

Query: 131 RAEDAAEDRILDVLLPPARDFGFTPDGSHAGGEKDDKNTTRQTFRKRLREGALDDREIEL 190
           RAEDAAEDRILDVLLPPARDFGFTPDGS+  GEKDDKNTTRQTFRKRLREGALDDREIEL
Sbjct: 121 RAEDAAEDRILDVLLPPARDFGFTPDGSNNSGEKDDKNTTRQTFRKRLREGALDDREIEL 180

Query: 191 ELNDAAPSMEIMAPPGMEEMTEQIKSMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVN 250
           EL +AAPSMEIMAPPGMEEMTEQIKSMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVN
Sbjct: 181 ELAEAAPSMEIMAPPGMEEMTEQIKSMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVN 240

Query: 251 EEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKYG 310
           EEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKYG
Sbjct: 241 EEELKQKAIANVEQNGIVFLDEIDKIATRSQNGNADVSRAGVQRDLLPLVEGTTVNTKYG 300

Query: 311 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQY 370
           MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQY
Sbjct: 301 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQY 360

Query: 371 EALLATEGVKIAFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTAGEAGV 430
           EALLATEGVK+ FADSGIKRLAEISH+VNEKTENIGARRLYTVMEKLLEEISFTAGEAGV
Sbjct: 361 EALLATEGVKLEFADSGIKRLAEISHSVNEKTENIGARRLYTVMEKLLEEISFTAGEAGV 420

Query: 431 EGLEIDADYVNERLGELAVDEDMSRYVL 458
           EGL IDADYVNERLGELAVDED+SRYVL
Sbjct: 421 EGLLIDADYVNERLGELAVDEDLSRYVL 448


>gi|300311894|ref|YP_003775986.1| ATP-dependent protease ATP-binding
           specificity subunit [Herbaspirillum seropedicae SmR1]
          Length = 421

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 71/107 (66%), Gaps = 13/107 (12%)

Query: 14  TPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRH-------EITPKNILMIG 66
           TP+EI   LD++V+GQA AKR +++A+ N ++R      L+H       E+   NIL++G
Sbjct: 67  TPQEITELLDQYVIGQATAKRILSVAVYNHYKR------LKHLGKKDDVELAKSNILLVG 120

Query: 67  PTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLV 113
           PTG GKT +A+ LA++ + PF+  +AT  TE GYVG DV+ II+ L+
Sbjct: 121 PTGSGKTLLAQTLARMLNVPFVIADATTLTEAGYVGEDVENIIQKLL 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,257,554
Number of extensions: 50276
Number of successful extensions: 247
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 2
Length of query: 458
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 370
Effective length of database: 1,203,190
Effective search space: 445180300
Effective search space used: 445180300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)