BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0195.p (926 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspiri... 1079 0.0 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 296 6e-81 gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 279 7e-76 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 267 3e-72 gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 257 2e-69 >gi|300310098|ref|YP_003774190.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 982 Score = 1079 bits (2790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 560/964 (58%), Positives = 694/964 (71%), Gaps = 52/964 (5%) Query: 7 LLSRLIRFSAATRLYRLHVSDQ-DEDRFLVEAYAAIDALHAVGATELIVLSLDAEPSPAS 65 LL++L++F+ A+RLY L + D LVEA+AA + LHAVG E+IVLSLDA S Sbjct: 4 LLTQLMQFTGASRLYSLSLGDAAPAGELLVEAFAASEGLHAVGLREVIVLSLDAGLRLKS 63 Query: 66 LLGCRATLEMRLADGGLHRCSGLLHEVTKLGGDGGFCRYRLRMAPWPWLLGQSSTSRVWQ 125 L+G RATL L+DG + SGL++E KLG +GG RYRLR+ PW WLL QS SRVWQ Sbjct: 64 LIGQRATLVTTLSDGSRTQFSGLVNEAAKLGSEGGLARYRLRIVPWVWLLSQSHNSRVWQ 123 Query: 126 DKRLLDVIEDVFREFPQHADWHWSADALAYLDRLPLRSYTVQYRQTHLDFISRLLAGEGL 185 DK ++D++EDVF ++ HA W W+ + ++ ++ RSYT+QYR+++L F+SRLLA EGL Sbjct: 124 DKTVIDIVEDVFADYAPHAAWTWTDEVAPFMQQVQPRSYTIQYRESNLAFVSRLLAAEGL 183 Query: 186 SWRIEEHAASPQGHRLLIFGDSTARSALPEDPTSAAH---GGIRFHGAREQQQQDGVQAL 242 SWR+EE A + GHRL++F DST+ A PED TS + GIRFH +++QD +QAL Sbjct: 184 SWRVEESADAASGHRLVLFADSTSPRAFPEDLTSTSPLGGSGIRFHAGTAREEQDSIQAL 243 Query: 243 AACRSLQATSYTLLSYDDQNKQAIAASIPTHHAFGSRTAPRLESYDSVGLDAHEDSQAAD 302 AA R+LQ S+TLLSYD ++KQA+A S+PT H FG + APRLESYDS GL A+ D+ AD Sbjct: 244 AARRALQPASFTLLSYDYKSKQAVATSLPTRHEFGGKDAPRLESYDSPGLYAYTDAAEAD 303 Query: 303 RHAHLMMEAAEARNKLWRARSTVRSLRAGTRLTLMQGPLA------GKEREYAVLALLSV 356 +A L +EA+EARNKLW+ARSTVR+LR GTR TL GPL G R+YAVL+++SV Sbjct: 304 HYARLHLEASEARNKLWQARSTVRTLRPGTRFTLADGPLGLSAAQDGAPRQYAVLSVMSV 363 Query: 357 GVNNLPADTEAALAELFGPLPVLLEDAIAACLKASS-------ANTLTTLAPDQ--GLID 407 GVNNLP D LAELFGP+P LLED +AAC + S ++L L G+I Sbjct: 364 GVNNLPKDAAEGLAELFGPIPPLLEDCVAACEEGQSLLHGQSGPDSLQLLGQTDIAGVIA 423 Query: 408 LARRMGHANVFEAIRADIPWRPVLADGTGLQRRPHALARGSQSAIVVGYWGETQANGPDE 467 AR++G+AN FEAIRAD+ WRPVLADGTGL+ A ARGSQSAIVVG GET A+ E Sbjct: 424 QARQLGYANAFEAIRADVIWRPVLADGTGLRLHARATARGSQSAIVVGPQGETSASSAGE 483 Query: 468 ICCDRLGRVRIRFHWQGRHDDAGATCWVRVGQRCAGPGMGLQFLPRIGQEVLVQFIENDL 527 I CDRLGRVRIRFHWQGR++DA ATCWVRV QR A G G+QFLPRIGQEVLVQFIE+D+ Sbjct: 484 IHCDRLGRVRIRFHWQGRNNDAAATCWVRVAQRAASGGAGMQFLPRIGQEVLVQFIEDDI 543 Query: 528 ERPIILGALYNGRGEGSVIPTPGGEVKDCSSME---VFAMASDTGISGQGNLAGTQAPTW 584 +RP+I+GALYNGRGEG+ PTPGG+ S + F A+D SGQGNLAG APTW Sbjct: 544 DRPVIVGALYNGRGEGAAAPTPGGDTAQAGSDDPARAFTSATDLQASGQGNLAGGNAPTW 603 Query: 585 HGASADRDGHRNPAAQWGIRSKEFGGWGYNQLLFDDSDGQGRLQFKTTQAGSELNLGHLI 644 HG S D DGH N AAQWGIRSKEFGG GYNQ++FDD+D QGR+Q KTTQ+GSELNLGHLI Sbjct: 604 HGGSQDSDGHGNTAAQWGIRSKEFGGSGYNQIVFDDTDAQGRIQLKTTQSGSELNLGHLI 663 Query: 645 HSADNYRGSFRGTGLELRTDAYGVIRAGAGILFSSYRVEHRAHHRDPAADNTGLRAMARQ 704 H+ADNYRGSFRGTG ELRTDAYG +RAG GILFSSY++E A RDPA DN G A+ +Q Sbjct: 664 HTADNYRGSFRGTGAELRTDAYGALRAGGGILFSSYKIEQNAASRDPAGDNVGGMALLKQ 723 Query: 705 AAHISKSFDEAARTHRTVGMSQGLDAMNAMKQAV-------------------------- 738 AA + K+F+EA TH+TVG++ L A + Sbjct: 724 AALLGKTFNEATLTHKTVGLASHLGPTQASASTINDSAAPLEAIRVAASGMVDGSPENSG 783 Query: 739 ----ASQAEIAGQTLPGSSTPLIQIAAKEGLGVVAGQHLQLANGRSVSLVAGQDAQHISG 794 A+ + LP S+ LI IAAKEGLG VAGQH+QLANG +V+L++G D+Q ++G Sbjct: 784 ADVAAANTQTGESKLPHSTAALIGIAAKEGLGAVAGQHMQLANGETVNLLSGADSQQVAG 843 Query: 795 HQFRLRTQQAIGLLAGASAAGDQGIGLQMIAAQGDVAVQAQADGMSVQARDQLMVVSANA 854 +Q+RLR+ QA+G+LAGA AAG+ G GLQMIAAQ ++ VQAQADG++VQARDQ+ V+SANA Sbjct: 844 NQYRLRSGQALGVLAGAMAAGEGGTGLQMIAAQKNIDVQAQADGLTVQARDQVRVISANA 903 Query: 855 GVNWAAAKKISLSTAGGANITIEGGNITVQCPGELTVHAGQIWLDGPARITTELPLMPQT 914 GV+WAAAKKI+LSTAGGANITIEGGNITVQCPG+LT+HA Q GP T LP MP + Sbjct: 904 GVDWAAAKKITLSTAGGANITIEGGNITVQCPGKLTIHAAQKLFAGPVSKTLPLPQMPNS 963 Query: 915 TPEE 918 ++ Sbjct: 964 VCKD 967 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 296 bits (757), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 264/936 (28%), Positives = 406/936 (43%), Gaps = 149/936 (15%) Query: 35 VEAYAAIDALHAVGATELIVLSLDAEPSPASLLGCRATLEMRLADGGLHRCSGLLHEVTK 94 VE + ++++ ++ LS+ + +G +L + ADGG G + + Sbjct: 44 VERFEGEESVNDNFRFDIDALSISTDLDLKQFIGAEISLRLLQADGGTRAWHGYCTQASW 103 Query: 95 LGGDGGFCRYRLRMAPWPWLLGQSSTSRVWQDKRLLDVIEDVFREFPQHADWHWSADALA 154 LG DGG RYRLR+ + L + S ++QD + D+ V +E+PQ A++ +L Sbjct: 104 LGADGGLARYRLRLESFLAFLDRRHDSFLFQDMTVTDIAAAVLKEYPQ-ANF-----SLE 157 Query: 155 YLDRLPLRSYTVQYRQTHLDFISRLLAGEGLSWRIE--------EHAAS-PQG-HRLLIF 204 L R QYR+T F+ R+LA EGL++R E +H S P H+L+IF Sbjct: 158 VTQTLAKRDICTQYRETDYAFLRRILASEGLNFRFEHEQDDATQQHDQSQPHARHKLVIF 217 Query: 205 GDSTARSALPEDPTSAAHGG---IRFHGAREQQQQDGVQALAACRSLQATSYTLLSYDDQ 261 + ALP GG IRFH + D + AA RS++ L S+ + Sbjct: 218 DRNAKAPALP--------GGDEYIRFHRVAAMEASDAITDFAAVRSVRPNGVALASWHPE 269 Query: 262 NKQAIAASIPTHHAFGSRTA---PRLESYDSVGLDAHEDSQAADRHAHLMMEAAEARNKL 318 S P+H + A P L YD G D AA HA LM++A E +NK Sbjct: 270 K-----LSSPSHEEGSTLDAGELPSLPVYDGTGQQDFADQDAAAAHAQLMLQALEMQNKR 324 Query: 319 WRARSTVRSLRAGTRLTLMQGPLAGK-EREYAVLALLSVGVNNLPADTEAALAELFGPLP 377 + R L AG R TL+Q + E + V+++ NN+ A+ + + P Sbjct: 325 FEGAGAARQLAAGARFTLLQHERYPEGENAFKVVSVRHAARNNVSAN----ITRILAPAA 380 Query: 378 VLLEDAIAACLKASSANTLTTLAPDQGLIDLARRMGHANVFEAIRADIPWRPVLADGTGL 437 L AA + T + N F AIR +P P + Sbjct: 381 GALFGGSAAAERDDDLQAGT----------------YRNSFTAIRDSVPMVPA-----AI 419 Query: 438 QRRPHALARGSQSAIVVGYWGETQANGPDEICCDRLGRVRIRFHWQ-------------G 484 R ARG+Q+A+V G + DR RV+++FHWQ G Sbjct: 420 AERLKPTARGTQTALVTGA-------ADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETG 472 Query: 485 RHDDAGATC--------WVRVGQRCAGPGMGLQFLPRIGQEVLVQFIENDLERPIILGAL 536 DD W+RV + +GP G QF+PR+G EVLV FIE D++RP+++ L Sbjct: 473 NLDDKDGNANGNDSSGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQL 532 Query: 537 YNGRGEGSVIPTPGGEVKDCSSMEVFAMASDTGISGQGNLAGTQAPTWHGASADRDGHRN 596 YNG P P G +D+GI+ G+++G WH + D Sbjct: 533 YNG---SDAPPFPAG--------------ADSGINHAGSISG-----WHSTAHD------ 564 Query: 597 PAAQWGIRSKEFGGWGYNQLLFDDSDGQGRLQFKTTQAGSELNLGHLIHSADN--YRGSF 654 G G+NQ + DD+ Q R++ ++ A S+LNLGHL+ AD RGS+ Sbjct: 565 -------------GSGFNQWVVDDTQSQLRMRLASSTAKSQLNLGHLVEQADTGAQRGSY 611 Query: 655 RGTGLELRTDAYGVIRAGAGILFSSY-RVEHRAHHRDPAADNTGLRAMARQAAHISKSFD 713 RG G ELR+DA+GV+R G G+L S+ R + A D G A + A ++++ Sbjct: 612 RGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAAGAIAQLKGAKSLAQTMS 671 Query: 714 EAARTHRTVGMSQGLDAMNAMKQAVASQ------AEIAGQTLPGSSTPLIQIAAKEGLGV 767 ++A + + +Q L A + A + GQ S A + + Sbjct: 672 DSATQQQALSSTQALQAKTDFLALIDPSDQGKHPASVNGQDALKSDGSTRNTDAAQPVEK 731 Query: 768 VAGQHLQLANGRSVSLVAGQDAQHISGHQFRLRTQQAIGLLAGASAAGDQGI-------- 819 A + + + S++ + + + TQ + A +A+ G Sbjct: 732 FAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQGDVHWSAADTASAAAGKAASFYSHD 791 Query: 820 -GLQMIAAQGDVAVQAQADGMSVQARDQLMVVSANAGVNWAAAKKISLSTAGGANITIEG 878 G+Q AA G V++QA D + + A + V S N + A +KI L AG A++T+EG Sbjct: 792 GGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKARQKIVLQ-AGQASVTLEG 850 Query: 879 GNITVQCPGELTVHAGQIWLDGPARITTELPLMPQT 914 GNIT CPG +V G A ++ +L +P T Sbjct: 851 GNITFACPGTFSVKGATHAFPGGASVSPDLMALPDT 886 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 279 bits (714), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 288/972 (29%), Positives = 416/972 (42%), Gaps = 139/972 (14%) Query: 1 MDIADSLLSRLIRFSAATRLYRLHVS-DQD-------EDRFLV-------EAYAAIDALH 45 M+++D L + +S + R+ RLH DQD +R E +AID Sbjct: 1 MNLSD-LPALFGAWSQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAI 59 Query: 46 AVGATELIVLSLDAEPSPASLLGCRATLEMRLADGGLHRCSGLLHEVTKLGGDGGFCRYR 105 A +L LSL+A+ S LLG LE+ DGG G + G +GG RY Sbjct: 60 AGYRLQLSCLSLNADISLRKLLGQPVLLELD-TDGGARAFHGHVTACRMEGANGGMARYL 118 Query: 106 LRMAPWPWLLGQSSTSRVWQDKRLLDVIEDVFREFPQHADWH--WS---ADALAYLDRLP 160 L + PW L S V+QD +IE VF ++ W DA AY R Sbjct: 119 LTIEPWLSFLRHRRDSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKR-- 176 Query: 161 LRSYTVQYRQTHLDFISRLLAGEGLSWRIEEHAASPQ---GHRLLIFGDSTARSALPEDP 217 S QY++T L F++RL+ EGL + IE S G ++ D S P Sbjct: 177 --SLATQYQETDLAFVTRLMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNG-SFKPN-- 231 Query: 218 TSAAHGGIRFHGAREQQQQDGVQALAACRSLQATSYTLLSYDDQNKQAIAASIPTHHAFG 277 A + F QD + + R Q + +L++D + AAS + Sbjct: 232 ---ARSTVAFAQTNAVMAQDNIDRWRSVRRWQTNAVEILTWDYRQTAVRAASTASS-GEN 287 Query: 278 SRTAPRLESYDSVGLDAHEDSQAADRHAHLMMEAAEARNKLWRARSTVRSLRAGTRLTLM 337 + L S D+ G +E + A R A M+A E RNK++ TVRS GT TL Sbjct: 288 AHDKLVLTSRDAPGQYINESPEQAQRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLT 347 Query: 338 QGPLAGKER--EYAVLALLSVGVNNLPADTEAALAELFGPLPVLLEDAIAACLKASSANT 395 ++ +L ++ NNL AD +A + L G + D + L + + Sbjct: 348 GHYDHDGGDDDQFVLLRVVHQAHNNLSADLKAGVTALLGQAQLDDHDHKGSLLDTALRSA 407 Query: 396 LTTLAPDQGLIDLARRMGHANVFEAIRADIPWRPVLADGTGLQRRPHALARGSQSAIVVG 455 D R + N FEAIR IP+RP+L D G + P A G QSA+VVG Sbjct: 408 -----------DTQARPVYRNRFEAIRNKIPYRPLLVDAQGERLYPKPQAHGQQSAVVVG 456 Query: 456 YWGETQANGPDEICCDRLGRVRIRFHWQ-GRHDDAG-----------------ATCWVRV 497 G+ + DR R+R++FHWQ G +G A WVRV Sbjct: 457 AQGQA-------VHTDRDNRIRVQFHWQRGERSHSGLSSPTPDDHVGAPANEQAGTWVRV 509 Query: 498 GQ---RCAGPGMGLQFLPRIGQEVLVQFIENDLERPIILGALYNGRGEGSVIPTPGGEVK 554 AG G Q +PR+GQEVL+ FIE D++RP+++G LYNGRG + G+ Sbjct: 510 LAGLAPTAGANWGGQAVPRVGQEVLIDFIEGDIDRPVVIGTLYNGRGVDNAQGNQAGQ-- 567 Query: 555 DCSSMEVFAMASDTGISGQGNLAGTQAPTWHGASADRDGHRNPAAQWGIRSK-----EFG 609 G G+ G AP W S+ H + A GI+++ + G Sbjct: 568 -----------------GAGSATGN-APAWFPGSS--GAHNHAAVLSGIKTQALSASQSG 607 Query: 610 GWGYNQLLFDDSDGQGRLQFK----TTQAGSELNLGHLIHSADNYRGSFRGTGLELRTDA 665 G GYNQL+FDDS GQ R + SELNLG L DN R + G G EL+T Sbjct: 608 GGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQRLATTGQGFELKTLY 667 Query: 666 YGVIRAGAGILFSSYRVEHRAHHRDPAADNTGLRAMARQAAHISKSFDEAARTH--RTVG 723 +RAG G+L S+ + D T + ++A + E A+ H R G Sbjct: 668 SAALRAGQGLLVSTEK------SISAQLDMTQGLSQLSESAQKQQQLAETAQKHNARLEG 721 Query: 724 MSQG--LDAMNAMKQAV----ASQ------------AEIAGQTLPGSSTPLIQIAAKEGL 765 S L A+ AM +++ A+Q A S P +Q+++ G+ Sbjct: 722 ESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQGSSATTATTAFSAPQLQLSSPAGI 781 Query: 766 GVVAGQHLQLANGRSVSLVAGQDAQHISGHQFRLRTQQAIGLLAGASAAG----DQGIGL 821 V +A G + S+ AG+D I+ ++ I L A+ +Q G+ Sbjct: 782 AAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGKASNGSKPNQETGM 841 Query: 822 QMIAAQGDVAVQAQADGMSVQARDQLMVVSANAGVNWAAAKKISLSTAGGANITIEGGNI 881 + AA G V+VQ+QA + + QL V S V+ A + + L+ A GA + +EGGNI Sbjct: 842 ALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGKQHVQLA-AQGAWLRLEGGNI 900 Query: 882 TVQCPGELTVHA 893 V PG + A Sbjct: 901 EVHGPGAMEFRA 912 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 267 bits (682), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 236/835 (28%), Positives = 370/835 (44%), Gaps = 121/835 (14%) Query: 87 GLLHEVTKLGGDGGFCRYRLRMAPWPWLLGQSSTSRVWQDKRLLDVIEDVFREFPQHADW 146 G +H +LG DG +++ MAPW L +R+WQD + D++ DVF QHA Sbjct: 100 GYVHTARRLGSDGQLASFQIGMAPWLHFLKYRKDARIWQDSKADDILADVFD---QHAYA 156 Query: 147 HWSADALAYLDRLPLRSYTVQYRQTHLDFISRLLAGEGLSWRIEEHAASPQGHRLLIFGD 206 + LP RSY QY +T F+ RL+ EG + E GH +L+ D Sbjct: 157 RGNYRFEIVTPALP-RSYCTQY-ETDWHFVQRLMEEEGW-YAYHEQKPDGSGH-VLVITD 212 Query: 207 STARSALPEDPTSAAHGGIRFHGAREQQQQDGVQALAACRSLQATSYTLLSYDDQN---- 262 +T + A P P A FHGA Q + + + +A R L +T + D ++ Sbjct: 213 NTDQ-AKPLAPEQLA-----FHGAGTQDEVNRILHWSASRGLASTRLATRTDDYKSPGDQ 266 Query: 263 KQAIAASIPTHHAFGSRTAPRLESYDSVGLDAHEDSQAADRHAHLMMEAAEARNKLWRAR 322 KQ +P H A LE Y+ G ++ DR A L +E E+ K + Sbjct: 267 KQTQERVLPEHGALPGE----LEVYEYSGPYSYAKQDDGDRQARLRVEQWESSMKRFMGV 322 Query: 323 STVRSLRAGTRLTLMQGPL----AGKEREYAVLALLSVGVNNLPADTEAALAELFGPLPV 378 S R+L AG TL P + ++ ++ ++A+ NNLP A + G L Sbjct: 323 SGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTAR--DFPGSLKP 380 Query: 379 LLEDAIAACLKASSANTLTTLAPDQGLIDLARRMGHA-NVFEAIRADIPWRPVLADGTGL 437 L DA A + S+ + R GH N FE R +P+R D T Sbjct: 381 QL-DAFKASMGRSNDDAGGNA-----------RTGHCFNRFEVQRRKLPYRSPF-DHTKP 427 Query: 438 QRRPHALARGSQSAIVVGYWGETQANGPDEICCDRLGRVRIRFHWQGRHD-DAGATCWVR 496 P Q+A+VVG GE E+ D+L RV+++F W + D A+CWVR Sbjct: 428 VMHP-------QTAVVVGPQGE-------EVFTDKLNRVKVQFRWDRINPGDEKASCWVR 473 Query: 497 VGQRCAGPGMGLQFLPRIGQEVLVQFIENDLERPIILGALYNGRGEGSVIPTPGGEVKDC 556 V AG G +PR+GQE+++ F+ D +RP+ G L+N Sbjct: 474 VSYPNAGENWGEVKVPRVGQELIISFLNGDPDRPVATGRLFNQE---------------- 517 Query: 557 SSMEVFAMASDTGISGQGNLAGTQAPTWHGASADRDGHRNPAAQWGIRSKEFGGWGYNQL 616 Q P WH DG + G++SKEFGG G+NQL Sbjct: 518 -----------------------QPPQWH-----TDGRLS-----GLKSKEFGGNGFNQL 544 Query: 617 LFDDSDGQGRLQFKTTQAGSELNLGHLIHSADNYRGSFRGTGLELRTDAYGVIRAGAGIL 676 + DD+ Q R+ ++Q+ ++LNLG+L+ ADN R +F G+G L TD YG + G+ Sbjct: 545 VMDDTTSQNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLY 604 Query: 677 FSSYRVEHRAHHRDPAADNTGLRAMARQAAHISKSFDEAARTHRTVGMSQG--LDAMNAM 734 SSY R + D + ++ + +A +++ ++A ++Q D ++A Sbjct: 605 LSSY---GRPGPQGTQLDASEATSLMKASADLARGLSDSASRAGAEALAQDSLKDFVDAT 661 Query: 735 KQAVASQAEIAGQTLPGSSTPLIQIAAKEGLGVVAGQHLQLANGRSVSLVAGQDAQHISG 794 + + Q + + PL+ +AA G+G+ Q Q+ + + +L +G+D SG Sbjct: 662 EDKYSGQGQGSANRF---KKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASG 718 Query: 795 HQFRLRTQQAIGLLAGASAAGDQGIGLQMIAAQGDVAVQAQADGMSVQARDQLMVVSANA 854 ++ I L A Q G+++ AA+G V +QAQ+D + + A ++S + Sbjct: 719 KSLLATVKEKISLFA-------QNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSG 771 Query: 855 GVNWAAAKKISLSTAGGANITIEGGNITVQCPGELTVHAGQIWLDGPARITTELP 909 V A ++ +S AGG+ I I IT PG+ A + GPA +P Sbjct: 772 RVEIHAKDEVMIS-AGGSFIQINSAGITQGTPGKWEAKASLHSMPGPASQNFVMP 825 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 257 bits (657), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 246/860 (28%), Positives = 372/860 (43%), Gaps = 129/860 (15%) Query: 66 LLGCRATLEMRLADGGLHRCSGLLHEVTKLGGDGGFCRYRLRMAPWPWLLGQSSTSRVWQ 125 L+ TL +R DG G +H +LG DG +L ++PW L +R+WQ Sbjct: 67 LIAQPVTLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQ 126 Query: 126 DKRLLDVIEDVFREFPQHADWHWSADALAYLDR-LPLRSYTVQYRQTHLDFISRLLAGEG 184 DKR D++ DVF PQ A H+ L+R R Y QY +T F+ RL+ EG Sbjct: 127 DKRTEDILADVFNNHPQ-ARGHYRFQ----LERPYTPRPYCTQY-ETDWHFVQRLMEEEG 180 Query: 185 LSWRIEEHAASPQGHRLLIFGDSTARSALPEDPTSAAHGGIRFHGAREQQQQDGVQALAA 244 + E GH L+I ++ LP+ GI FHGA + + D + +A Sbjct: 181 W-FAHHEQREDGSGHVLVITDNTWNLPGLPQQ-------GIAFHGAAPRDELDKILHWSA 232 Query: 245 CRSLQATSYTLLSYDDQN----KQAIAASIPTHHAFGSRTAPRLESYDSVGLDAHEDSQA 300 R+L + + S D ++ K+A +P +G A +LE Y+ G + + Sbjct: 233 SRTLSSKGWRGRSDDYKSPGMKKEAEEQVMP---EYGQLPA-QLEMYEYTGAYSFRLQEQ 288 Query: 301 ADRHAHLMMEAAEARNKLWRARSTVRSLRAGTRLTLMQGPL----AGKEREYAVLALLSV 356 +R A L +E E+ + + A S VR+L G L + P +ER++ +LA+ Sbjct: 289 GNRQADLQVEQWESSMQRYSAVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWF 348 Query: 357 GVNNLPADTEAALAELFGPLPVLLEDAIAACLKASSANTLTTLAPDQGLIDLARRMGHA- 415 NNLP +A P L+ A+ A K S D GH Sbjct: 349 VENNLPLSHQAL------DFPGSLKGALMA-FKESIRRERQVAETDN------EHTGHCF 395 Query: 416 NVFEAIRADIPWRPVLADGTGLQRRPHALARGSQSAIVVGYWGETQANGPDEICCDRLGR 475 N FE R +P+RP A RP L Q+AIVVG E E+ D L R Sbjct: 396 NRFEVQRRKLPFRPARAHA-----RPVMLP---QTAIVVGPASE-------EVYTDHLDR 440 Query: 476 VRIRFHWQGRHD-DAGATCWVRVGQRCAGPGMGLQFLPRIGQEVLVQFIENDLERPIILG 534 ++++F W + + A+CWVRV AG G +PRIGQEV+V F+ D +RP++ G Sbjct: 441 IKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSFLNGDPDRPVVTG 500 Query: 535 ALYNGRGEGSVIPTPGGEVKDCSSMEVFAMASDTGISGQGNLAGTQAPTWHGASADRDGH 594 L+N Q P WH +G Sbjct: 501 RLFNAE---------------------------------------QRPQWHT-----NGR 516 Query: 595 RNPAAQWGIRSKEFGGWGYNQLLFDDSDGQGRLQFKTTQAGSELNLGHLIHSADNYRGSF 654 + G++SKEFGG G+NQ++ DD+ Q R+ +T ++LNLGHL+ N R SF Sbjct: 517 LS-----GVKSKEFGGTGFNQMVMDDTPEQNRIHLYSTNTHAQLNLGHLVSQTGNERRSF 571 Query: 655 RGTGLELRTDAYGVIRAGAGILFSSYRVEHRAHHRDPAADNTGLRA-----MARQAAHIS 709 G+G L TDAYG I G+ S+Y P A T L A + A++S Sbjct: 572 FGSGFALSTDAYGAIVTHKGLYISTY--------GRPGAQGTQLDAREATGQLKSGANLS 623 Query: 710 KSFDEAARTHRTVGMSQGLDAMNAMKQAVASQAEIAGQTLPGSSTPLIQIAAK-EGLGVV 768 ++ E A ++ G +A+ A + E Q I +AA +G+G+ Sbjct: 624 RTLSETAAKAGAEPLA-GQEALRDFIDATQADYEDPSQAQANRFQQAILLAASPDGIGLT 682 Query: 769 AGQHLQLANGRSVSLVAGQDAQHISGHQFRLRTQQAIGLLAGASAAGDQGIGLQMIAAQG 828 + + G ++L +G D G + I L A + G+++ +A+G Sbjct: 683 TPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAFKA-------GIKLFSAKG 735 Query: 829 DVAVQAQADGMSVQARDQLMVVSANAGVNWAAAKKISLSTAGGANITIEGGNITVQCPGE 888 V VQAQ+D + + A ++SA+ V A +++ L TAGG+ I + IT G Sbjct: 736 KVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEV-LITAGGSFIRLNASGITQGTSGA 794 Query: 889 LTVHAGQIWLDGPARITTEL 908 AG + GP + E+ Sbjct: 795 WEAKAGTHAMPGPTTLAYEM 814 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,052,559 Number of extensions: 139430 Number of successful extensions: 517 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 458 Number of HSP's successfully gapped: 15 Length of query: 926 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 832 Effective length of database: 1,174,780 Effective search space: 977416960 Effective search space used: 977416960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)