BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0190.p (241 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 463 e-132 gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC t... 463 e-132 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 239 2e-64 gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPa... 234 4e-63 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 224 4e-60 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 463 bits (1191), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/241 (94%), Positives = 235/241 (97%) Query: 1 MTTNILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKV 60 MTTNILKV+QLSVAYGGIQAVKGI LEVNEGELVTLIGANGAGKTTTLKAITGTLP+S+V Sbjct: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 Query: 61 DGHIYYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADI 120 +GHI YLG PLKGKKSFELVKDKLAMVPEGRGVFTRMSI ENLLMGAYTS+DKGQIAADI Sbjct: 61 EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI 120 Query: 121 DRWFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 D+WF VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 Query: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLGE 240 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITM GQA+QMLDDPRVKAAYLGE Sbjct: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240 Query: 241 G 241 G Sbjct: 241 G 241 >gi|300309522|ref|YP_003773614.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 463 bits (1191), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/241 (94%), Positives = 235/241 (97%) Query: 1 MTTNILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKV 60 MTTNILKV+QLSVAYGGIQAVKGI LEVNEGELVTLIGANGAGKTTTLKAITGTLP+S+V Sbjct: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 Query: 61 DGHIYYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADI 120 +GHI YLG PLKGKKSFELVKDKLAMVPEGRGVFTRMSI ENLLMGAYTS+DKGQIAADI Sbjct: 61 EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQIAADI 120 Query: 121 DRWFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 D+WF VFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF Sbjct: 121 DKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 Query: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLGE 240 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITM GQA+QMLDDPRVKAAYLGE Sbjct: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYLGE 240 Query: 241 G 241 G Sbjct: 241 G 241 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 239 bits (609), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 123/241 (51%), Positives = 175/241 (72%), Gaps = 6/241 (2%) Query: 5 ILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKVDGHI 64 +L + L AYG ++ + GI++EV +G++VTLIG+NGAGKTTT++AI+G + G + Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPK--GGEV 58 Query: 65 YYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYT----SNDKGQIAADI 120 G + G S ++ + LA PEGR VF MS+ +NLL+GA+ + KG IA D+ Sbjct: 59 TLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDL 118 Query: 121 DRWFEVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIF 180 +R E+FPRLKER +Q+AGTLSGGEQQMLAMARA+M +P+++LLDEPSMGL+PI+V+++F Sbjct: 119 ERALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVF 178 Query: 181 EVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLGE 240 +I + QG+T+LLVEQ A AL A GYV+E+G I+++G A ++ +DP VKAAYLG Sbjct: 179 RIIVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGG 238 Query: 241 G 241 G Sbjct: 239 G 239 >gi|300312240|ref|YP_003776332.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 243 Score = 234 bits (598), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 116/235 (49%), Positives = 166/235 (70%), Gaps = 2/235 (0%) Query: 5 ILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKVDGHI 64 IL+VE L+VAYG I+AVKGI+L +NEGE+ L+GANGAGK+T+L AI+G + + + G + Sbjct: 10 ILQVEDLAVAYGHIEAVKGISLSLNEGEITALVGANGAGKSTSLLAISGLVKAQR--GRV 67 Query: 65 YYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADIDRWF 124 G L +V+ + V EGR T +++ ENL +GAYT DK +A D++ + Sbjct: 68 LLHGQDLLQMSPHRIVESGVVQVAEGRATLTTLTVEENLGLGAYTRKDKDGVARDLEWVY 127 Query: 125 EVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 +FP LK RAA +AG LSGGEQQMLA+ RALM+ PK+LLLDEPSMGL+P+++++IF +++ Sbjct: 128 SLFPVLKNRAAGLAGNLSGGEQQMLAIGRALMAKPKVLLLDEPSMGLAPLIIQEIFRIVQ 187 Query: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLG 239 ++ G+T+LLVEQN + AL A RGYV+E+G I + +L +P+V AYLG Sbjct: 188 EINKTGMTVLLVEQNVRQALRIAQRGYVLETGKIVLEDSGANLLGNPKVVEAYLG 242 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 224 bits (572), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 113/237 (47%), Positives = 167/237 (70%), Gaps = 3/237 (1%) Query: 5 ILKVEQLSVAYGGIQAVKGIALEVNEGELVTLIGANGAGKTTTLKAITGTLPSSKVDGHI 64 +L+ +++ YG I+A+ G++L V +GE+VTLIGANGAGKTT L + G +S G + Sbjct: 2 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRAS--SGRV 59 Query: 65 YYLGHPLKGKKSFELVKDKLAMVPEGRGVFTRMSIHENLLMGAYTSNDKGQIAADIDRWF 124 + G + ++ E+++ LA+ PEGR VF +++ ENL MGA+ ++++ I I+ F Sbjct: 60 IFEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEA-IEQGIEYVF 118 Query: 125 EVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEKIFEVIR 184 +FPRLKERAAQ AGT+SGGEQQMLA+ RALMS P+LLLLDEP++GL+P+++ +IF++IR Sbjct: 119 GLFPRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFDIIR 178 Query: 185 NVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMNGQAKQMLDDPRVKAAYLGEG 241 + G+T+ LVEQNA AL A RGYV+E+G + M+ +L + V+ AYLG G Sbjct: 179 TIRESGVTVFLVEQNANKALGVADRGYVLENGHVVMSDTGANLLANSDVRKAYLGHG 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 710,213 Number of extensions: 28553 Number of successful extensions: 478 Number of sequences better than 1.0e-08: 119 Number of HSP's gapped: 318 Number of HSP's successfully gapped: 133 Length of query: 241 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 158 Effective length of database: 1,226,865 Effective search space: 193844670 Effective search space used: 193844670 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)