BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0183.p (154 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 315 1e-87 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 161 2e-41 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 139 1e-34 gi|300310455|ref|YP_003774547.1| AsnC family transcription regul... 108 2e-25 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 100 6e-23 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 315 bits (807), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 154/154 (100%), Positives = 154/154 (100%) Query: 1 MAGLDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPE 60 MAGLDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPE Sbjct: 1 MAGLDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPE 60 Query: 61 LLDVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYR 120 LLDVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYR Sbjct: 61 LLDVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYR 120 Query: 121 EFLGKSLLQLKGVRETHTYAVMEEVKNTIRLPIR 154 EFLGKSLLQLKGVRETHTYAVMEEVKNTIRLPIR Sbjct: 121 EFLGKSLLQLKGVRETHTYAVMEEVKNTIRLPIR 154 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 161 bits (408), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 73/150 (48%), Positives = 107/150 (71%) Query: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 LDK+ +ILA LQ DGRIS +L +V LS C+ERVR+++ G I GY A++NPE L Sbjct: 11 LDKLDHRILAVLQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESLG 70 Query: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 +LLVF+E+ L+ + ++F +F++ V IPE+ ECH+V+G FDYL+K+R++ M YR+ L Sbjct: 71 ATLLVFVEITLNHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLL 130 Query: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 G LLQL G ++ +Y VMEE+K T+ LP+ Sbjct: 131 GDILLQLPGAAQSKSYVVMEEIKETLALPL 160 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 139 bits (350), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 67/151 (44%), Positives = 99/151 (65%) Query: 3 GLDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELL 62 LD++ K+IL LQ DGRI N +LA ++ +S AC ++L E GY+ A L+PE L Sbjct: 2 SLDRMDKRILKALQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEKL 61 Query: 63 DVSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREF 122 + +LV + VVLDR+TP+ FAEF+K+V+ I + EC ++AG FDY +K RVKD+ A+ Sbjct: 62 GLPVLVTVGVVLDRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNRL 121 Query: 123 LGKSLLQLKGVRETHTYAVMEEVKNTIRLPI 153 +LL+L GVR+ ++ V+ EVKN L + Sbjct: 122 HANTLLRLPGVRQLRSFFVLNEVKNNPELVV 152 >gi|300310455|ref|YP_003774547.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 108 bits (269), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 56/140 (40%), Positives = 89/140 (63%) Query: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 LD+I +IL LQ + RI+NV LA V LSP+ CL RV++L++AGYI GY A + E L Sbjct: 9 LDRIDLRILCHLQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKLA 68 Query: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 +VF EV L + FA+F+ +++++ EI+ECH+V+GG+DYL+K + + Y+ + Sbjct: 69 DVQIVFTEVTLSDHRREDFAKFESTIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQSVI 128 Query: 124 GKSLLQLKGVRETHTYAVME 143 L Q + + +Y V++ Sbjct: 129 ESLLEQNLRIEKYFSYIVIK 148 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 100 bits (249), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 89/149 (59%) Query: 4 LDKISKKILAELQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLD 63 LD +IL LQ + ISN++LA+R+NLSP+ L RV++L+ G I Y A +P LL Sbjct: 3 LDTTDLRILNILQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLG 62 Query: 64 VSLLVFIEVVLDRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFL 123 + + VF++V+L+R + A+F+ +V + E+ME +++ G DYL++ V D+ F+ Sbjct: 63 LKVNVFVKVILERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDLLTLEHFI 122 Query: 124 GKSLLQLKGVRETHTYAVMEEVKNTIRLP 152 L ++ G++ + ++++K LP Sbjct: 123 VDHLTKIPGIKNIRSSFALKQIKYKTALP 151 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 430,298 Number of extensions: 15440 Number of successful extensions: 54 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 54 Number of HSP's successfully gapped: 9 Length of query: 154 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 77 Effective length of database: 1,255,275 Effective search space: 96656175 Effective search space used: 96656175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)