BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0180.p (684 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309512|ref|YP_003773604.1| TonB-dependent heme/hemoglobin ... 1192 0.0 gi|300309449|ref|YP_003773541.1| TonB-dependent hemoglobin/trans... 62 1e-10 >gi|300309512|ref|YP_003773604.1| TonB-dependent heme/hemoglobin receptor protein [Herbaspirillum seropedicae SmR1] Length = 690 Score = 1192 bits (3085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/692 (85%), Positives = 638/692 (92%), Gaps = 10/692 (1%) Query: 1 MALQRQLIASAVLTALAAWSVSAAAQVAD--------TAAAASAVPTTPATQPALQPIVV 52 MA+QRQLIA+AVL+ALA WS++A+AQ A + +A A QPALQPIVV Sbjct: 1 MAIQRQLIATAVLSALATWSLAASAQTAAPAAPIDPAVSVTPAAPAAPAAAQPALQPIVV 60 Query: 53 TATPFASQEDVQVLTPAKVIAGDELRNKLGNSLGETLNGELGVSASAFGAGASRPIIRGM 112 TATPF SQEDVQVLTPAKVIAGDELRNKLGNSLGETL+ ELGVSASAFGAGASRPIIRGM Sbjct: 61 TATPFGSQEDVQVLTPAKVIAGDELRNKLGNSLGETLSSELGVSASAFGAGASRPIIRGM 120 Query: 113 EGPRVMILQNGMGVADVSTVSNDHAVATEAATARQVEILRGPATLLYGSGAIGGLVNVVN 172 EGPRVMILQNGMGV+DVSTVSNDHAVATEAATARQ+EILRGPA LLYGSGAIGGLVNVVN Sbjct: 121 EGPRVMILQNGMGVSDVSTVSNDHAVATEAATARQIEILRGPAALLYGSGAIGGLVNVVN 180 Query: 173 DRIPTELVGKPTGTVEGRYGTVDGEKNGSFSLDTSAGQIGLHLDGNYRDTDNYKIPGNAR 232 DRIPTELVGKPTGTVEGRYGTVDGEKN SFSLDTSAGQIGLHLDGNYRDT +YKIPGNAR Sbjct: 181 DRIPTELVGKPTGTVEGRYGTVDGEKNTSFSLDTSAGQIGLHLDGNYRDTSDYKIPGNAR 240 Query: 233 QADSSSASGRLPNSFTHETSLGAGISYVSNWGYIGLSAATLDDHYGIPTDEMSFIDLHQS 292 Q D S+ASGRLPNSFTHE+S+G G SYVSNWGY+G+SAATLDDHYGIPT E+SFIDLHQ+ Sbjct: 241 QGDGSTASGRLPNSFTHESSVGLGASYVSNWGYVGVSAATLDDHYGIPTSELSFIDLHQN 300 Query: 293 RYDFDTVVNRPFAGIEKLRVRMGYTDYTHIEKQQNGTPNTVFSNRALQTRWELTHALLAG 352 RYD DTVVN+PFAGIEKLR+R+GYTDYTHIEKQ++GTP+TVFSNRA+QTRWELTHA LAG Sbjct: 301 RYDIDTVVNQPFAGIEKLRMRLGYTDYTHIEKQRDGTPDTVFSNRAVQTRWELTHAPLAG 360 Query: 353 WHGTFGVQTEQSNYSALAPDTGAAELTPPTRSNSLAGFLVEERQFGQVLASAGLRAESVS 412 WHGTFGVQTEQSNYSAL+ TGAAELTPPTRS S AGFLVEERQFGQVLASAGLR ESVS Sbjct: 361 WHGTFGVQTEQSNYSALSAATGAAELTPPTRSTSFAGFLVEERQFGQVLASAGLRGESVS 420 Query: 413 RRPDSGSGLPGRDFSLLSWSTGGLWAFQPGYGLGLTYSFAQRAPTVEELYSNGPHESTST 472 RRPD+G GRDF+LLSWSTG LW FQPGYGLGLTYS AQRAPTVEELYSNGPHESTST Sbjct: 421 RRPDAGR--QGRDFNLLSWSTGALWTFQPGYGLGLTYSLAQRAPTVEELYSNGPHESTST 478 Query: 473 FDIGDQQLKKETSHNVELSLQKTEGLVRWKGNVFRNKVNNFIYGRTNGQVDSSGAADPNG 532 FDIG QLKKETSHN+ELSLQKTEGLVRWKGN+FRNKVNN+IYGRTNGQVD SGAADPNG Sbjct: 479 FDIGSSQLKKETSHNIELSLQKTEGLVRWKGNLFRNKVNNYIYGRTNGQVDDSGAADPNG 538 Query: 533 EFTQRFWSQGDATIRGVEAEVTYNWNGEGLSGRVFADTSRGTLENLGNLPLQPATRYGIE 592 EFTQRFWSQ DA IRG EAEV+YNWNGEG+SGR+FADTSRGTL+NLGN+PLQPATRYG+E Sbjct: 539 EFTQRFWSQADAAIRGAEAEVSYNWNGEGMSGRLFADTSRGTLDNLGNIPLQPATRYGVE 598 Query: 593 LGYKTGPWASGVKLLRAQKQDRLASFETYETPSYTQLDANLSYTQRINGAKLTWFALARN 652 LGYKTGPWASG+K+LRAQ+QDRLASFETY TPSYTQ+DANLSYTQ++NG KLTWFALARN Sbjct: 599 LGYKTGPWASGMKVLRAQRQDRLASFETYATPSYTQVDANLSYTQKLNGVKLTWFALARN 658 Query: 653 LLNQDIRLSTSVLRESVPLGGRNFIVGVRTSF 684 LLNQDIRLSTSVLRE+VP+GGRNFIVG RTSF Sbjct: 659 LLNQDIRLSTSVLRETVPMGGRNFIVGARTSF 690 >gi|300309449|ref|YP_003773541.1| TonB-dependent hemoglobin/transferrin/lactoferrin receptor protein [Herbaspirillum seropedicae SmR1] Length = 765 Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 25/197 (12%) Query: 8 IASAVLTALAAW-SVSAAAQVADTAAAASAVPT-----TPATQPALQPIVVTATPFASQE 61 A+AV AL W V A AQ + S+ A+ LQ +VVTA S + Sbjct: 11 CAAAVFLALQQWLCVGAYAQADQPQSVQSSSSDPSVVLAQASGKKLQEVVVTANRSGSSD 70 Query: 62 DVQVLTPAKVIAGDELRNKLGNSLGETLNGELGVSA--------------SAFGAGASRP 107 VI+ +E+ + + L E GV + G G + Sbjct: 71 SDHAAATVSVISAEEIEQHNARDIKDALRYEPGVEVKRSVYRMSGITGPGATTGRGGNEG 130 Query: 108 I-IRGMEGPRVMILQNGMGVA---DVSTVSNDHAVATEAATARQVEILRGPATLLYGSGA 163 I IRG++G RV++L++G+ + T S T+ R++E+LRGPA+ LYGS Sbjct: 131 ISIRGLDGNRVLMLEDGISMPRSFSYGTSSVGRGATTDTELYRRIEVLRGPASSLYGSDG 190 Query: 164 IGGLVNVVNDRIPTELV 180 + G VN + + P +L+ Sbjct: 191 LTGAVNFIT-KDPADLL 206 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.131 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,123,466 Number of extensions: 95881 Number of successful extensions: 244 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 245 Number of HSP's successfully gapped: 3 Length of query: 684 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 592 Effective length of database: 1,184,250 Effective search space: 701076000 Effective search space used: 701076000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)