BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0174.p (473 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase... 790 0.0 gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillu... 75 1e-14 gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein [Her... 72 1e-13 gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptid... 58 1e-09 >gi|300309506|ref|YP_003773598.1| membrane-bound metallopeptidase [Herbaspirillum seropedicae SmR1] Length = 470 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/468 (92%), Positives = 447/468 (95%), Gaps = 1/468 (0%) Query: 7 RGCLRALAAIGVGCLLCAAVQAQPITERTKQKQAAEKEQADLQQRLANLKRDIDKTETAK 66 RG +R A L AAVQ+QPITER +QKQAAEKE+ADLQQRLANLKRDID TETAK Sbjct: 3 RGGIRPWLAGLALLLATAAVQSQPITERARQKQAAEKERADLQQRLANLKRDIDHTETAK 62 Query: 67 DNAADALSASEQAISKANRSLRDLAQEQQATEARLAQLVKQLNELTALVNAQQAQLSKLL 126 DNAADAL+ASEQAISKANRSLRDLAQEQQ TEARL QL++QLNELTALVNAQQAQLSKLL Sbjct: 63 DNAADALAASEQAISKANRSLRDLAQEQQQTEARLNQLIRQLNELTALVNAQQAQLSKLL 122 Query: 127 REQYVAGNEDRIKLLLSGDNPNRINRELQYMGYVSQAQAKLIETLRANQQAIRANKADTQ 186 REQYVAGNEDRIKLLLSGDNPNRINRELQYMGYVSQAQAKLIETLRANQQAIRANKADTQ Sbjct: 123 REQYVAGNEDRIKLLLSGDNPNRINRELQYMGYVSQAQAKLIETLRANQQAIRANKADTQ 182 Query: 187 NAKFELEEIAQEELEQKKVLEREKGRRQTLLSQLSTKLNAQRQEAGRLEQDQQRLSSLVD 246 NAKFELEEIAQEELEQKKVLEREKGRRQTLLSQLSTKLNAQRQEAGR+EQDQQRLSSLVD Sbjct: 183 NAKFELEEIAQEELEQKKVLEREKGRRQTLLSQLSTKLNAQRQEAGRIEQDQQRLSSLVD 242 Query: 247 KLAQIIEQQKKAEAEAREKRRQEQLAKAKAEREKRLAEQRARAEKRAAEAAKAAKEGKPA 306 KLAQIIEQQKKAEAEAREKRRQEQLAKAKAEREKRLAEQRARAEKRAAEAAKAAKEGKPA Sbjct: 243 KLAQIIEQQKKAEAEAREKRRQEQLAKAKAEREKRLAEQRARAEKRAAEAAKAAKEGKPA 302 Query: 307 PKTPDPADAIDDDEPPQSASLGRNDTLPEP-SDNFGKPFASLRGQLHLPVKGELVSKFGS 365 PK PDPADAIDDDEPPQ ASLGRNDT+PEP DNFGKPFASLRGQLHLPVKG+L++KFGS Sbjct: 303 PKMPDPADAIDDDEPPQQASLGRNDTVPEPQPDNFGKPFASLRGQLHLPVKGDLMAKFGS 362 Query: 366 RRGDGPTSRGLFIRAQEGSEVRAVAAGRVVFADWLRGFGNLIIVDHGNQYMTIYGNNQSV 425 RRGDGPTSRGLFIRA EG+EVRAVAAGRVVFADWLRGFGNLIIVDHGNQYMTIYGNNQSV Sbjct: 363 RRGDGPTSRGLFIRAHEGAEVRAVAAGRVVFADWLRGFGNLIIVDHGNQYMTIYGNNQSV 422 Query: 426 LKRAGDLVKAGETIATAGNSGGNEQSGLYFEMRYQGRAFDPLGWVTSR 473 LKRAGDLVKAG+TIATAGNSGGNEQSGLYFEMRYQGRAFDP GWVTSR Sbjct: 423 LKRAGDLVKAGDTIATAGNSGGNEQSGLYFEMRYQGRAFDPQGWVTSR 470 >gi|300313095|ref|YP_003777187.1| NlpD lipoprotein [Herbaspirillum seropedicae SmR1] Length = 254 Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 59/93 (63%), Gaps = 2/93 (2%) Query: 374 RGLFIRAQEGSEVRAVAAGRVVFA-DWLRGFGNLIIVDHGNQYMTIYGNNQSVLKRAGDL 432 +G+ I EG V A AAG+V +A +RG+GN++I+ H Q +++Y +N+++L + G Sbjct: 155 KGIDIIGSEGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNKTILVKEGQT 214 Query: 433 VKAGETIATAGNSGGNEQSGLYFEMRYQGRAFD 465 V G+ IAT GNS N+ LYFE+R G+ + Sbjct: 215 VTRGQQIATMGNSDTNKVK-LYFEIRRNGKPIN 246 >gi|300312264|ref|YP_003776356.1| NlpD precursor lipoprotein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 8/122 (6%) Query: 353 LPVKGELVSKFGSRRGDGPTSRGLFIRAQEGSEVRAVAAGRVVFA-DWLRGFGNLIIVDH 411 P +G++V F + +G+ I + G V A AG+V++A +RG+GNL+I+ H Sbjct: 218 WPAEGKVVGTFEGGK------KGVDIAGKAGQAVLAAGAGKVMYAGSGIRGYGNLVIIKH 271 Query: 412 GNQYMTIYGNNQSVLKRAGDLVKAGETIATAGNSGGNEQSGLYFEMRYQGRAFDPLGWVT 471 + ++ Y +NQ++L + G V G+ IA G S ++ L+FE+R QG+ DP ++ Sbjct: 272 TSNLLSAYAHNQTILVKEGQSVTKGQKIAEMGKS-DSDTVKLHFEIRQQGKPVDPSKYLP 330 Query: 472 SR 473 R Sbjct: 331 PR 332 >gi|300309687|ref|YP_003773779.1| transmembrane metalloendopeptidase [Herbaspirillum seropedicae SmR1] Length = 325 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 4/110 (3%) Query: 361 SKFGSR----RGDGPTSRGLFIRAQEGSEVRAVAAGRVVFADWLRGFGNLIIVDHGNQYM 416 S FG R G GL A G+ + A AAG V+ +++ FGN++ +DHGN + Sbjct: 192 SSFGWRLDPFTGHNAFHEGLDFPAPVGTRIVAAAAGVVIASEYHYQFGNMLEIDHGNNII 251 Query: 417 TIYGNNQSVLKRAGDLVKAGETIATAGNSGGNEQSGLYFEMRYQGRAFDP 466 T Y + + + GD+VK G+ +A G++G + + L+FE+R +G A DP Sbjct: 252 TRYAHASRLFVKVGDIVKRGQHVADVGSTGRSTGAHLHFEVRIRGIAQDP 301 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,014,517 Number of extensions: 34755 Number of successful extensions: 230 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 230 Number of HSP's successfully gapped: 5 Length of query: 473 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 384 Effective length of database: 1,198,455 Effective search space: 460206720 Effective search space used: 460206720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)