BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0173.p
         (248 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309505|ref|YP_003773597.1| 2,3-bisphosphoglycerate-depende...   506   e-145
gi|300309751|ref|YP_003773843.1| phosphoglycerate mutase 2 prote...    58   8e-10

>gi|300309505|ref|YP_003773597.1| 2,3-bisphosphoglycerate-dependent
           phosphoglycerate mutase [Herbaspirillum seropedicae
           SmR1]
          Length = 248

 Score =  506 bits (1303), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 244/248 (98%), Positives = 247/248 (99%)

Query: 1   MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGFSFDLAYTSVLKR 60
           MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGF+FDLAYTSVLKR
Sbjct: 1   MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGFTFDLAYTSVLKR 60

Query: 61  AIRTLWTTLDEMDQMYIPIKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRSYDTP 120
           AIRTLWTTLDEMDQMYIPIKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRSYDTP
Sbjct: 61  AIRTLWTTLDEMDQMYIPIKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRSYDTP 120

Query: 121 PNPLTPGEERDSFGDARYAGLSREQVPLTECLKDTVARVLPAWNDAIAPAIRAGKQIIVS 180
           PNPLTPGEERD+FGD RYAGLSREQVPLTECLKDTVARVLPAWNDAIAPAIRAGKQII+S
Sbjct: 121 PNPLTPGEERDAFGDPRYAGLSREQVPLTECLKDTVARVLPAWNDAIAPAIRAGKQIIIS 180

Query: 181 AHGNSLRALIKYLDGISDNDIVGLNIPNGQPLVYELDADLKPIKSYYLGDQSAIEAALKA 240
           AHGNSLRALIKYLDGISDNDIVGLNIPNGQPLVYELDADLKPIKSYYLGDQSAIEAALKA
Sbjct: 181 AHGNSLRALIKYLDGISDNDIVGLNIPNGQPLVYELDADLKPIKSYYLGDQSAIEAALKA 240

Query: 241 VANQGKSK 248
           VANQGKSK
Sbjct: 241 VANQGKSK 248


>gi|300309751|ref|YP_003773843.1| phosphoglycerate mutase 2 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 214

 Score = 57.8 bits (138), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 28/226 (12%)

Query: 1   MYKIVFMRHGESTWNLANRFTGWVDVDLTEKGVAEARQAGKLLKEAGFSFDLAYTSVLKR 60
           M +I+ +RHGE+ WN+  R  G +D+ L   G  +    G+ L   G   D  + S L+R
Sbjct: 1   MTEILLIRHGETDWNVDKRLQGHIDIGLNAAGQRQVLALGEALAAEG--IDAVFASDLQR 58

Query: 61  AIRTLWTTLDEMDQMYIPIKNDWRLNERHYGALQGLNKAETAAQYGDEQVLVWRRSYDTP 120
           A  T            + ++ D  L ER YGA +GL  +E  A+Y D     +R+     
Sbjct: 59  ARDTAQAVAGTAG---LTVQIDAGLRERCYGAFEGLRHSEIEARYPD----AYRQWKARD 111

Query: 121 PNPLTPGEERDSFGDARYAGLSREQVPLTECLKDTVARVLPAWNDAIAPAIRAGKQIIVS 180
           P+   P  ER                 + E +++   R + A    +A   R GK  IV+
Sbjct: 112 PDFRYPAGER-----------------VAETMREFYERSVQAMQRVLASG-RYGKVAIVT 153

Query: 181 AHGNSLRALIKYLDGISDNDIVGLNIPNGQPLVYELDADLKPIKSY 226
            HG  L  +  +    S       +I N        D     I+S+
Sbjct: 154 -HGGVLECVHHWASQTSFAQPRTFDIFNASVNRLHWDGQRAHIRSW 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 827,249
Number of extensions: 34878
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 248
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,226,865
Effective search space: 202432725
Effective search space used: 202432725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)