BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0165.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirill...   368   e-103
gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase [...   107   9e-25
gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase [Herb...    66   2e-12

>gi|300309498|ref|YP_003773590.1| sugar transferase [Herbaspirillum
           seropedicae SmR1]
          Length = 215

 Score =  368 bits (945), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/215 (83%), Positives = 193/215 (89%)

Query: 1   MSEPTIAPALVIFDCDGTLVDSEVVAARAWSEYVAGYGVTLSPAEALARFRGVSMKWCIS 60
           M++   +PALVIFDCDGTLVDSEVVAARAWSEYVA YGV L+P +ALARFRGVSM WCI+
Sbjct: 1   MNDFATSPALVIFDCDGTLVDSEVVAARAWSEYVATYGVQLTPEDALARFRGVSMSWCIA 60

Query: 61  HIEQLSGQVLPAHFEQELRALMGGMLEQHLQPINGAVEMVEQLRLPFALASNAPHHKIEL 120
           H+ QL GQ LPAHFEQELRA MG MLEQHLQPINGA+EMVEQL++PFALASNAPHHKIEL
Sbjct: 61  HVAQLRGQALPAHFEQELRARMGVMLEQHLQPINGALEMVEQLQIPFALASNAPHHKIEL 120

Query: 121 CLRVTGLLPHFAGRIFSAYDVQRWKPDPALFLFAAERLGVDPPRCAVVEDSLPGVQAALA 180
           CLRVTGLLPHF GRIFSAYDVQRWKPDPALFLFAAERLGV P RCAVVEDSLPGVQA LA
Sbjct: 121 CLRVTGLLPHFHGRIFSAYDVQRWKPDPALFLFAAERLGVPPARCAVVEDSLPGVQAGLA 180

Query: 181 AGMKVIALQEHGVHPEMPAGVPIITRLAQLHSHLA 215
           AGMKVIALQEHGVHP++P  V +IT L QLH HLA
Sbjct: 181 AGMKVIALQEHGVHPDLPEEVAVITHLGQLHPHLA 215


>gi|300309784|ref|YP_003773876.1| phosphatase/phosphohexomutase
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  107 bits (266), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 103/202 (50%), Gaps = 31/202 (15%)

Query: 11  VIFDCDGTLVDSEVVAAR-----------AWSEYVAGYGVTLSPAEALARFRGVSMKWCI 59
           +I DCDG L+DSE +A R           AWS      G   +        R  ++   I
Sbjct: 10  LICDCDGVLLDSESIALRVLHRELLPLLPAWS------GAGGADDGEQEEQRSAALHAAI 63

Query: 60  SH-----IEQLSGQVLPAHFEQELRALMGGMLEQHLQ--------PINGAVEMVEQLRLP 106
           +H      + L G+V    FE  L A     + Q +         P+ G VE ++ +RLP
Sbjct: 64  AHRLGMYTDILLGEV-DMEFELGLDAAQAERIHQTVALACGDEALPVPGVVEALQAIRLP 122

Query: 107 FALASNAPHHKIELCLRVTGLLPHFAGRIFSAYDVQRWKPDPALFLFAAERLGVDPPRCA 166
            A+ASN+   +IE  LR  GL P FAGRI+S +DV   KP P ++L AA   GVDP RC 
Sbjct: 123 RAVASNSDAPRIEAGLRRCGLYPQFAGRIYSGHDVAHPKPAPDVYLAAAAGFGVDPSRCV 182

Query: 167 VVEDSLPGVQAALAAGMKVIAL 188
            V+DS+ GV+AA+AAGM V+  
Sbjct: 183 AVDDSVTGVRAAVAAGMHVLGF 204


>gi|300313787|ref|YP_003777879.1| HAD-superfamily hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 65.9 bits (159), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 85/182 (46%), Gaps = 8/182 (4%)

Query: 12  IFDCDGTLVDSEVVAARAWSEYVAGYGVTLSPAEALARFRGVSMKWCISHI--EQLSGQV 69
           +FD DGTL+DS+ +   A++  +A +   +          G S      H+     + Q 
Sbjct: 66  LFDLDGTLMDSDALHHAAFNTILARWDRHIDVEYYKTHIMGASNAMIFGHLFPGMPAEQY 125

Query: 70  LPAHFEQELRALMGGMLEQHLQPINGAVEMVEQLRL---PFALASNAPHHKIELCLRVTG 126
           LP   E+E  +L    L+Q ++P  G   ++E +R      A+ +NAP    EL L+ TG
Sbjct: 126 LPLAEEKE--SLFRSQLDQRVEPTPGIERLLEHIRRIGGRSAVVTNAPRANAELMLKATG 183

Query: 127 LLPHFAGRIFSAYDVQRWKPDPALFLFAAERLGVDPPRCAVVEDSLPGVQAALAAGMKVI 186
           L   F   +    ++ R KPDP  +L   + LG +       EDS  GV+AA +AG+   
Sbjct: 184 LAGQFDTLVIGD-ELARAKPDPLPYLTGLQLLGGEAGAAVAFEDSSSGVKAASSAGIWTF 242

Query: 187 AL 188
            +
Sbjct: 243 GM 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 780,857
Number of extensions: 34341
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 3
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)