BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0155.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase...   742   0.0  
gi|300313015|ref|YP_003777107.1| maleylacetate reductase [Herbas...    97   2e-21

>gi|300309488|ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/379 (95%), Positives = 372/379 (98%)

Query: 1   MALINYITQVQFDYGALALLQQECDRLGIKKPLLVTDPGIRNAGLLDKVLGQLKDGAGAV 60
           MALINYITQVQFDYGALALLQQECDRLGIKKPL+VTD GIRNAGLLDKVLGQLK+G GAV
Sbjct: 1   MALINYITQVQFDYGALALLQQECDRLGIKKPLVVTDMGIRNAGLLDKVLGQLKEGVGAV 60

Query: 61  VYDQTPPNPNEGAVRTAVALFREHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALI 120
           VYDQTPPNPNEGAVR AVALFR+HGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALI
Sbjct: 61  VYDQTPPNPNEGAVRAAVALFRQHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALI 120

Query: 121 EGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVPRLAICDPELT 180
           EGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVP+LAICDPELT
Sbjct: 121 EGGLANITAKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVPKLAICDPELT 180

Query: 181 LGLPPLMTAATGMDAIAHCLETFMAPAFNPPADGIALDGLWRAWAHIERATREPGDREAR 240
           LGLPPLMTAATGMDAIAHCLETFMAP+FNPPADGIALDGLWRAWAHIERATREPGDREAR
Sbjct: 181 LGLPPLMTAATGMDAIAHCLETFMAPSFNPPADGIALDGLWRAWAHIERATREPGDREAR 240

Query: 241 LNMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIAFNESAPSMVK 300
           LNMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIAFNESA SMVK
Sbjct: 241 LNMMSASMQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIAFNESAASMVK 300

Query: 301 DNKMARMAHAMGLSSGAEIGPAIREMSRRLGLPAGLRELGVSESLFPQIIKGALADHSHK 360
           DNKMARMAHAMGL SGAEIGPAIREMSRRLGLPAGL ELGV+ES+FPQII+GALADHSHK
Sbjct: 301 DNKMARMAHAMGLGSGAEIGPAIREMSRRLGLPAGLGELGVTESMFPQIIQGALADHSHK 360

Query: 361 TNPREASQQDYLQMLQQSM 379
           TNPREAS+QDYL MLQQSM
Sbjct: 361 TNPREASEQDYLHMLQQSM 379


>gi|300313015|ref|YP_003777107.1| maleylacetate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 167/371 (45%), Gaps = 38/371 (10%)

Query: 9   QVQFDYGALALLQQECDRLGIKKPLLVTDPGIRNAGLLDKVLGQLKDGAGAVVYDQTPPN 68
           +V F +G+L  L +E + LG ++ L++  PG R      + +  L     A ++DQ   +
Sbjct: 12  RVIFGHGSLQHLVRETELLGAQRALVLCTPGQRAEA---ERVAALIGARCAGIFDQAVMH 68

Query: 69  PNEGAVRTAVALFREHGCDGIVAVGGGSSIDLAKGVAVCGTHEGPLKSFALIEGGLANIT 128
                 R A  + R  G D  +A+GGGS++ L K +A+    E  L              
Sbjct: 69  VPIETARHAREVARALGADCAIAIGGGSTMGLGKAIAL----ESEL-------------- 110

Query: 129 AKTAPVIAIPTTAGTGSEVGRGAILILDDGRKVGIISPYLVPRLAICDPELTLGLPPLMT 188
               P++AIPTT   GSE+      + + GRK       ++PR  I DP L+LGLP  ++
Sbjct: 111 ----PILAIPTTYA-GSEM-TPIYGLTEAGRKKTGRDARVLPRTVIYDPALSLGLPLDLS 164

Query: 189 AATGMDAIAHCLETFMAPAFNPPADGIALDGLWRAWAHIERATREPGDREARLN-MMSAS 247
             +G++A+AH  E   AP  NP    +A +GL      + +      D +AR   +  A 
Sbjct: 165 VTSGINAMAHAAEGLYAPDANPIMSLLAEEGLRALAEGLPQLAARADDIDARSRCLYGAW 224

Query: 248 MQGAMAFQKGLGCVHSLSHSLGGINPRLHHGTLNAIFLPAIIAFNESAPSMVKDNKMARM 307
           + G +    G+   H L H+LGG +  L H   + + LP       +  +      M R+
Sbjct: 225 LCGTVLGNVGMSLHHKLCHTLGG-SYNLPHAQTHTVILP----HALAYNAAAAPQAMQRI 279

Query: 308 AHAMGLSSGAEIGPAIREMSRRLGLPAGLRELGVSESLFPQIIKGALADHSHKTNPREAS 367
           A A+G+   A+    +  ++R L  P  L+ELG+      Q  + AL   +   NPR   
Sbjct: 280 ARALGVEDAAQ---GVYALARALHAPLSLKELGMPYEALAQCTEIAL--QNAYANPRPLQ 334

Query: 368 QQDYLQMLQQS 378
           ++    +L+ +
Sbjct: 335 REALHALLEDA 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,299,417
Number of extensions: 60511
Number of successful extensions: 179
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)