BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0152.p
         (596 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange tra...  1028   0.0  

>gi|300309485|ref|YP_003773577.1| thiol:disulfide interchange
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score = 1028 bits (2658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/593 (89%), Positives = 554/593 (93%), Gaps = 1/593 (0%)

Query: 5   NRRERLTRFPLLIVLALLALLGLLVAKAAQAADDYLPPEQAFQLSGRMVDAQTLELSYRI 64
           + R+ L R PLL+ LA+LALLGLL AKAAQAA+DYLPPEQAFQLSGRMVDAQTLELSYRI
Sbjct: 8   DPRKPLPRLPLLMWLAVLALLGLLAAKAAQAAEDYLPPEQAFQLSGRMVDAQTLELSYRI 67

Query: 65  ADGYYMYRDRFHFSAEGATLGQPQFPAGKRKYDENFQKEVETYHQSVTVRVPVSGEVKDF 124
           ADGYYMYRDRFHFSAEGATLG+PQFPAGKRKYDENFQ+EVETYHQSVT RVPVSG V  F
Sbjct: 68  ADGYYMYRDRFHFSAEGATLGEPQFPAGKRKYDENFQQEVETYHQSVTARVPVSGAVDKF 127

Query: 125 VVLAVSQGCADKGLCYPPMTLKLSMSAQAIGQSVSPVGT-GAETAASGGSDVDRITAVLK 183
           VV AVSQGCADKGLCYPPMTLKL+MSAQAIGQSVSP G  GA   ++GGSD+D I AVLK
Sbjct: 128 VVAAVSQGCADKGLCYPPMTLKLTMSAQAIGQSVSPAGAEGAVQGSAGGSDIDGIAAVLK 187

Query: 184 AGKLWPILTLFFLLGIGLSFTPCVLPMLPILSSIIVGQQPAKGGGRGRSFLLSLDYSLGM 243
            GKLW IL+LFF+LGIGLSFTPCVLPMLPILSSIIVGQQPA GGGRGRSFLLS++YSLGM
Sbjct: 188 GGKLWSILSLFFVLGIGLSFTPCVLPMLPILSSIIVGQQPAAGGGRGRSFLLSVNYSLGM 247

Query: 244 ILIYTALGVVAGMLGEGLSAYLQNPWVLAAFALLMAGLALSMFDLYTLQVPASLQSRLST 303
            L+YT LGVVAGMLGEGLSAYLQNPWVL AFALLMAGLALSMFDLYTLQVPASLQS+LST
Sbjct: 248 ALVYTGLGVVAGMLGEGLSAYLQNPWVLGAFALLMAGLALSMFDLYTLQVPASLQSKLST 307

Query: 304 ASGGGSGKWLGVFVMGAISALIVGPCVAAPLAGALLYISQTGDVVLGGSALFAMAAGMSV 363
           ASGGGSGKWLGVF+MGAISALIVGPCVAAPLAGALLYISQTG+V+LGGSALFAMA GMSV
Sbjct: 308 ASGGGSGKWLGVFLMGAISALIVGPCVAAPLAGALLYISQTGNVMLGGSALFAMAMGMSV 367

Query: 364 PLLLIGASAGALLPRAGAWMDAVKRFFGVLMLGTALWMVAPVIPAWLQVAGWAALGIGYG 423
           PLLLIGASAG LLPRAGAWMDAVKRFFGVLMLGTALWM++PVIPAWLQVAGWAALG+GYG
Sbjct: 368 PLLLIGASAGTLLPRAGAWMDAVKRFFGVLMLGTALWMISPVIPAWLQVAGWAALGVGYG 427

Query: 424 AFLLWTRPAGWMSRALGLAVVTLGLLQLVSVATGGRDPLAPLSHLRGQAVATGATDFVRI 483
           AFLLWTRPAGW++RA GL VVTLGLLQLVS ATGGRDPLAPLSHLRGQ+ A  ATDFVRI
Sbjct: 428 AFLLWTRPAGWIARAFGLVVVTLGLLQLVSAATGGRDPLAPLSHLRGQSAAAHATDFVRI 487

Query: 484 RSSAELDAALQQNAAGERRPVMLDFYADWCVSCKEMERFTFTDPRVKERFGQMLLLQIDV 543
           RSSAELDAALQQNAAGERRPVMLDFYADWCVSCKEMERFTFTD RVK RFGQMLLLQIDV
Sbjct: 488 RSSAELDAALQQNAAGERRPVMLDFYADWCVSCKEMERFTFTDERVKARFGQMLLLQIDV 547

Query: 544 TANNADDRAMLKRFKLFGPPGIMFFDGDGRELTSRRVIGYQDADRFISTLQNL 596
           TANNADDRAMLKRF LFGPPGIMFFD DGREL SRRVIGYQDADRFIS LQNL
Sbjct: 548 TANNADDRAMLKRFNLFGPPGIMFFDADGRELASRRVIGYQDADRFISALQNL 600


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,654,622
Number of extensions: 65200
Number of successful extensions: 401
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 505
Effective length of database: 1,188,985
Effective search space: 600437425
Effective search space used: 600437425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 133 (55.8 bits)