BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0117.p
         (374 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309450|ref|YP_003773542.1| hemin transport protein [Herbas...   484   e-138

>gi|300309450|ref|YP_003773542.1| hemin transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 381

 Score =  484 bits (1246), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/360 (65%), Positives = 285/360 (79%), Gaps = 5/360 (1%)

Query: 17  GCATQP-SLAERWAQLQQAQPKLHTRDAARELGVSEAQLLATQIGHGAQRLRASEQDIQA 75
           GCA  P +L++RW QLQQAQP+LH R+AA +LGVSEA+LLA+     A RL +  +D+QA
Sbjct: 23  GCAANPPTLSQRWTQLQQAQPRLHLREAAHQLGVSEAELLASDANWQATRLTSDARDLQA 82

Query: 76  LLERLPELGRIKAITRNEDAVLERAGEVTPVRRDEQGRVVPGTGFAGGPIDLRFGNARWG 135
           L ERL ELGRIKA+ RN+D +LER G VTP RRDEQGRVVPGTG AGGPIDLR G  +WG
Sbjct: 83  LYERLAELGRIKAVIRNDDVMLERTGAVTPARRDEQGRVVPGTGLAGGPIDLRIGGVQWG 142

Query: 136 SAFAVVQAGRAGKTSRSLQLFDRQGNAVHKVYLDNEQHVAQFDQLVADFRMADQHAALTV 195
           SAFAV Q GR GK  RSLQ FD+ G A+HK+YLDN++H+A +++LVA+FR+A Q A L  
Sbjct: 143 SAFAVAQPGRDGKALRSLQFFDQHGQAIHKIYLDNDEHIAAYERLVAEFRIAGQPAPLIA 202

Query: 196 EPAA--PPALPAAAATPSAEAIRELRQSWQELTDVHQFPRLLRELKLTREQALQLIGPES 253
            PA   PPA      T SA  + +LRQ+W +LTDVHQFPRLLRELKL+REQALQLIG +S
Sbjct: 203 LPAPTQPPA--DVRGTASAADVAQLRQAWTKLTDVHQFPRLLRELKLSREQALQLIGDDS 260

Query: 254 AWRIRPQAAQALLEEAKARQQPIMVFVSNGGMTQIYSGLIGKTATVGEWYNVLDPDFNLH 313
           AWRI  Q  Q L+++A+AR+QPIM FVS GGMTQIYSG+I +++  G WY VL  DF L 
Sbjct: 261 AWRISAQGLQLLMDDARARRQPIMAFVSQGGMTQIYSGMIDRSSNSGAWYEVLGEDFRLK 320

Query: 314 LRASAVDHGWVVRRPTDHGMVTSVEFYDAQGRQIVNFFSRRERGQPETGQWRQMVEALPR 373
           +R++ +DHGWVVRRPTDHGMVTSVEFYDA GRQ+VNFFSRR+RGQPET QWR+MVEALPR
Sbjct: 321 VRSATIDHGWVVRRPTDHGMVTSVEFYDAAGRQLVNFFSRRDRGQPETAQWRRMVEALPR 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,068,100
Number of extensions: 42104
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,207,925
Effective search space: 346674475
Effective search space used: 346674475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)