BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0116.p (752 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309449|ref|YP_003773541.1| TonB-dependent hemoglobin/trans... 1286 0.0 gi|300312129|ref|YP_003776221.1| TonB-dependent ferric sideropho... 57 5e-09 >gi|300309449|ref|YP_003773541.1| TonB-dependent hemoglobin/transferrin/lactoferrin receptor protein [Herbaspirillum seropedicae SmR1] Length = 765 Score = 1286 bits (3328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 630/762 (82%), Positives = 684/762 (89%), Gaps = 10/762 (1%) Query: 1 VSPSKSRCAAAVLMALQQWLCAGAFAQSADVNSNP----------ASVSGRKLQDVVVTA 50 VSP KSRCAAAV +ALQQWLC GA+AQ+ S A SG+KLQ+VVVTA Sbjct: 4 VSPCKSRCAAAVFLALQQWLCVGAYAQADQPQSVQSSSSDPSVVLAQASGKKLQEVVVTA 63 Query: 51 NRAGSTDLDHAAATVSVITSQEMEEHNTKDIKDALRYEPGVEVRRSVYRMSGITGASATT 110 NR+GS+D DHAAATVSVI+++E+E+HN +DIKDALRYEPGVEV+RSVYRMSGITG ATT Sbjct: 64 NRSGSSDSDHAAATVSVISAEEIEQHNARDIKDALRYEPGVEVKRSVYRMSGITGPGATT 123 Query: 111 GRGGNEGITMRGLDGNRVLMLEDGIVMPRAFSQGVASVGRGATTDTELYRRIEVLRGPAS 170 GRGGNEGI++RGLDGNRVLMLEDGI MPR+FS G +SVGRGATTDTELYRRIEVLRGPAS Sbjct: 124 GRGGNEGISIRGLDGNRVLMLEDGISMPRSFSYGTSSVGRGATTDTELYRRIEVLRGPAS 183 Query: 171 SLYGSDGLTGAINFITKDPADLLGVYGKSTYFSFKPSYDSVDKSFGATASTAWGGEQWQG 230 SLYGSDGLTGA+NFITKDPADLL V+GKS+YFSFKPSYDS D S GA+AS AWGG+QWQG Sbjct: 184 SLYGSDGLTGAVNFITKDPADLLEVFGKSSYFSFKPSYDSGDHSSGASASAAWGGQQWQG 243 Query: 231 MLILNTRHGNQADNKGTNDVLGTARTTPDPMSYTNRSALGKLVFKPNGVDSFKLTLQATE 290 MLILNTRHG+QADNKG+NDVLGTARTTPDPM Y RSALGKLVF+PNGVD FKLTLQATE Sbjct: 244 MLILNTRHGSQADNKGSNDVLGTARTTPDPMHYNTRSALGKLVFRPNGVDLFKLTLQATE 303 Query: 291 ERDSGDSLSALANGVTAYSTSSKSTGQRATLAYEHVDPDQPWMQKFKANLYYRNADTDQY 350 +RDSGDSLSAL NGVT Y TSSKSTGQRATLAYEHVD + PW+QK KA+L YRNADTDQY Sbjct: 304 QRDSGDSLSALTNGVTQYHTSSKSTGQRATLAYEHVDAEHPWVQKIKASLTYRNADTDQY 363 Query: 351 TFEAGASSRTIVRPRFRDVSYSDQMIGGGLLGESNFGPDGWRHKLVYGLDLSLSTLQTSA 410 T+EAGAS+ +IVRPRFR V+Y D+M G LL ESNFGPD WRHKLVYGLDLSLSTLQ +A Sbjct: 364 TYEAGASAGSIVRPRFRAVAYQDRMSAGSLLAESNFGPDSWRHKLVYGLDLSLSTLQVNA 423 Query: 411 NGTGWTSCTGTQYCQYFPKTEYTQLGAYVQDEMRTGALTTIAGLRLDSYELKPKASAKYD 470 NGTGW +CTGTQYCQYFPKTE LG Y+QDEMRTGALTTIAGLR DSYELKP+ASAKYD Sbjct: 424 NGTGWNTCTGTQYCQYFPKTESNLLGVYLQDEMRTGALTTIAGLRYDSYELKPQASAKYD 483 Query: 471 AQASANGQPAVSSRDSAFSPRLAFLYEVTPAFIPYIQYARGFRSPSPQEVNSFFNNTVYR 530 AQA ANGQPAVSSRDSA SPRLA LYEVTPAFIPYIQYARGFRSPS QEVNSFFNNTVYR Sbjct: 484 AQAIANGQPAVSSRDSALSPRLALLYEVTPAFIPYIQYARGFRSPSAQEVNSFFNNTVYR 543 Query: 531 QVSNPDLKPETSNTVEVGLRGKLAAGGGSLRYSAAAYKGNYRNFIDLVTVGGNLTVANPT 590 QVSNPDLKPETSNTVE+GLRGKLA G G+LRYSAAAYKGNY NFIDLVTVGGNLT+ANPT Sbjct: 544 QVSNPDLKPETSNTVELGLRGKLALGAGALRYSAAAYKGNYSNFIDLVTVGGNLTMANPT 603 Query: 591 IFQYRNAAKAEIHGLEGRIDYAMDNGVSLKGGVAWTKGTTTANGVEQGLESVAPLSLVTG 650 IFQYRNAAKAEIHGLEGR+DY MD G SLK G AWTKG+TT+NG+E+GLESVAPLS+VTG Sbjct: 604 IFQYRNAAKAEIHGLEGRLDYQMDIGFSLKSGFAWTKGSTTSNGLERGLESVAPLSVVTG 663 Query: 651 VRYEPTSTWFVQSDLIYNAAKKKADIPTSTNFVSPAFFVMDLSGGYHLSRNMTLYAGIRN 710 +RYE + F QSDL+YNAAKKK DIPT+TNFVSPAFFVMD+SGGYHL+RNMTLYAGIRN Sbjct: 664 LRYERSQQGFFQSDLVYNAAKKKEDIPTATNFVSPAFFVMDISGGYHLNRNMTLYAGIRN 723 Query: 711 LFDRKYWSWTDIRGLSLADSAVNKDAYTEPGRSFNLSLKIAY 752 LFDRKYWSWTDIRGLSLADSAVNKDAYTEPGRSFNLSLKI Y Sbjct: 724 LFDRKYWSWTDIRGLSLADSAVNKDAYTEPGRSFNLSLKIEY 765 >gi|300312129|ref|YP_003776221.1| TonB-dependent ferric siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 796 Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 132/556 (23%), Positives = 216/556 (38%), Gaps = 120/556 (21%) Query: 56 TDLDHAAATVSVITSQEMEEHNTKDIKDALRYEPGVEVRRSVYRMSGITGASATTGRGGN 115 T L +VSVI + ++ + + + D LR GV R Y G Sbjct: 165 TPLSETPKSVSVINAAVIQSQSAQTLSDVLRNASGVVARPGPY---------------GV 209 Query: 116 EGITMRGLDGNRVLMLEDGIVMPRAFSQGVASVGRGAT----TDTELYRRIEVLRGPASS 171 +RG GN +M S G++S G A+ T T +EV++GP++ Sbjct: 210 PSFAIRGYVGNAPVM-----------SDGLSSYGSAASPAALTPTIAIAGVEVVKGPSAI 258 Query: 172 LYGSDGLTGAINFITK----DPADLLGVYGKSTYFSFKPSYDS---VDKS----FGATAS 220 + G +N I K +P + V S FS + ++DS +D+ + S Sbjct: 259 MAADAPPGGVVNVIKKAPQVEPFHEVQVAYGSNSFS-QVAFDSTGAIDEDKRLRYRFVVS 317 Query: 221 TAWGGEQWQG------MLILNTRHGNQADNKGTNDVLGTARTT---PDP---MSYTNRSA 268 E + G I T Q ++ T+ LG A T P P + Y Sbjct: 318 ADKSSENFMGYDGGRHFYIAPTL---QWKDRSTDLTLGYAHTVTREPFPQYTVGYARGGY 374 Query: 269 LGKLVFKP--NGVDSFKLT---LQATEERDSGDSLSALA-NGVTAYSTSSKSTGQRATLA 322 + V P N D F +T L A E+ D+L+ ++ NG T S + GQ A Sbjct: 375 VDGYVEHPLGNRGDHFSMTADELTAKLEQKLSDNLTFVSKNGYT-----STTQGQDGWAA 429 Query: 323 YEHV-DPDQPWMQKFKANLYYRNADTDQY----TFEAGASSRTIVRPRFRDVSYSDQMIG 377 V + + + FK++ Y A++ Y + AG S T+V V YS Sbjct: 430 ASTVTNSNALTLLGFKSSANYYTANSQNYLRLKSDLAGVKSTTLV-----GVDYS----- 479 Query: 378 GGLLGESNFGPDGWRHKLVYGLDLSLSTLQTSANGTGWTSCTGTQYCQYFPKTEYTQLGA 437 + H + Y + S +T GT + + F + ++G+ Sbjct: 480 -------------YMHYVQYDRNSSSTTTIPDIFGTINVAPISSPLTYQF-GGQTQRVGS 525 Query: 438 YVQDEMRTGALTTIAGLRLDSYELKPKASAKYDAQASANGQPAVSSRDSAFSPRLAFLYE 497 Y+Q+++ LT +A +R DSY +S +A + G +A+SP L +Y+ Sbjct: 526 YLQEQLIYSNLTVLASIRRDSY----LSSTNIVGRAPSGGM-----HQTAYSPSLGLMYQ 576 Query: 498 VTPAFIPYIQYARGFRSPSPQEVNSFFNNTVYRQVSNPDLKPETSNTVEVGLRGKLAAGG 557 +TP PY+ + +GF+ P V ++ L P+ S E G++ L Sbjct: 577 LTPEIAPYVNWNKGFQ---PNNVTAYGGGL---------LAPKQSEQFEAGVKFNLM--D 622 Query: 558 GSLRYSAAAYKGNYRN 573 L + A Y +Y N Sbjct: 623 DKLELTTALYHIDYTN 638 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.130 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,390,918 Number of extensions: 104002 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 264 Number of HSP's successfully gapped: 3 Length of query: 752 Length of database: 1,619,870 Length adjustment: 92 Effective length of query: 660 Effective length of database: 1,184,250 Effective search space: 781605000 Effective search space used: 781605000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)