BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0104.p
         (379 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase ...   761   0.0  
gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase [H...    62   6e-11

>gi|300309437|ref|YP_003773529.1| homoserine O-acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 379

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/379 (96%), Positives = 370/379 (97%)

Query: 1   MSIGIVSPQVMQFAEPLPLQSGASLAHYSLTYETYGSLNADKSNAVLVCHALNASHHVAG 60
           MSIGIVSPQVM FAEPLPLQ G++LA YSLTYETYG+LNADKSNAVLVCHALNASHHVAG
Sbjct: 1   MSIGIVSPQVMHFAEPLPLQGGSALADYSLTYETYGTLNADKSNAVLVCHALNASHHVAG 60

Query: 61  VYADDPDNVGWWDNMVGPGKSLDTDRFFVIGVNNLGSCFGSTGPMHPNPATGQPYGADFP 120
           VYADDPDNVGWWDNMVGPGKSLDTDRFFVIGVNNLGSCFGSTGPMH NPATG+PYGADFP
Sbjct: 61  VYADDPDNVGWWDNMVGPGKSLDTDRFFVIGVNNLGSCFGSTGPMHANPATGKPYGADFP 120

Query: 121 VVTVEDWVNAQARLADRLGIDCFAAIMGGSLGGMQALAWSMMYPDRLRHCLVIASTPKLS 180
           VVTVEDWVNAQARLADRLGI CFAA+MGGSLGGMQALAWSMMYPDRLRHCLVIASTPKLS
Sbjct: 121 VVTVEDWVNAQARLADRLGITCFAAVMGGSLGGMQALAWSMMYPDRLRHCLVIASTPKLS 180

Query: 181 AQNIAFNDVARQAILTDPQYHGGDFYAHGVVPKNGLRVARMVGHITYLSDDDMAEKFGRD 240
           AQNIAFNDVARQAILTDPQYHGGDFYAHGVVPKNGLRVARMVGHITYLSDDDMAEKFGRD
Sbjct: 181 AQNIAFNDVARQAILTDPQYHGGDFYAHGVVPKNGLRVARMVGHITYLSDDDMAEKFGRD 240

Query: 241 LRSGQYQFGYGVDFEIESYLRYQGDKFSTYFDANTYLLITKALDYFDPAREFGGDLAKAF 300
           LRSGQYQFGYGVDFEIESYLRYQGDKFSTYFDANTYLLITKALDYFDPAREFGGDLAKA 
Sbjct: 241 LRSGQYQFGYGVDFEIESYLRYQGDKFSTYFDANTYLLITKALDYFDPAREFGGDLAKAL 300

Query: 301 ARTRAKFLLVSFTTDWRFSPERSREMVQALVANKRRVSYAEIDAPHGHDAFLLDDARYMK 360
           A T+AKFLLVSFTTDWRFSPERSREMVQALVANKRRVSYAEIDAPHGHDAFLLDDARYMK
Sbjct: 301 ACTKAKFLLVSFTTDWRFSPERSREMVQALVANKRRVSYAEIDAPHGHDAFLLDDARYMK 360

Query: 361 VVREYYASIWNELQQEGRA 379
           VVREYY SIW ELQQEGRA
Sbjct: 361 VVREYYGSIWTELQQEGRA 379


>gi|300310402|ref|YP_003774494.1| homoserine acetyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 359

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 89/190 (46%), Gaps = 22/190 (11%)

Query: 19  LQSGASLAHYSLTYETYGSLNADKSN-AVLVCHALNASHHVAGVYADDPDNVGWWDNMVG 77
             +G +L +  L Y T G    D++N AVLV H    S     + + D     +   + G
Sbjct: 47  FHTGQTLENLRLHYVTLG----DRANPAVLVLHGTYQSAQA--MLSKD-----FGGQLFG 95

Query: 78  PGKSLDTDRFFVIGVNNLGSCFGSTGPMHPNPATGQPYGADFPVVTVEDWVNAQAR-LAD 136
           PG+ LD  ++F+I  + +G    S       P+ G    A FP     D V AQ R L +
Sbjct: 96  PGQPLDASKYFIIIPDGIGVGKSS------KPSDG--LRAAFPQYNYADMVLAQYRMLTE 147

Query: 137 RLGIDCFAAIMGGSLGGMQALAWSMMYPDRLRHCLVIASTP-KLSAQNIAFNDVARQAIL 195
            +GI     I+G S+GGMQ   W   YP      + +AS P +++++N     +  ++I 
Sbjct: 148 GMGITHLRLIIGNSMGGMQTWIWGGTYPGFADGLVPMASQPTEMASRNWMMRRMLVESIK 207

Query: 196 TDPQYHGGDF 205
            DP ++ G++
Sbjct: 208 QDPAWNNGNY 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,320,727
Number of extensions: 59425
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,207,925
Effective search space: 352714100
Effective search space used: 352714100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)