BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0103.p
         (596 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309436|ref|YP_003773528.1| phosphoenolpyruvate-protein pho...  1139   0.0  

>gi|300309436|ref|YP_003773528.1| phosphoenolpyruvate-protein
           phosphotransferase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 595

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/595 (94%), Positives = 578/595 (97%)

Query: 1   MASFSLHGIAVSQGIAIGRAHLMAPAALDVKHYLIAAPQVEAEVARLKSAVKAVHQELHT 60
           MASFSLHGIAVSQGIAIGRAHLMAPAALDVKHYLIAA QVEAE+ RLKSAVKAVHQELHT
Sbjct: 1   MASFSLHGIAVSQGIAIGRAHLMAPAALDVKHYLIAADQVEAEIERLKSAVKAVHQELHT 60

Query: 61  IRTELPKDAPPELGAFIDVHSLILSDPLLAEVPQDIIRHRYYNAEWALVTQIEELSAQFD 120
           IR+ELP++APPELGAFIDVHSLILSDP+LAEVPQDIIRHRYYNAEWALVTQIEELSAQFD
Sbjct: 61  IRSELPREAPPELGAFIDVHSLILSDPMLAEVPQDIIRHRYYNAEWALVTQIEELSAQFD 120

Query: 121 DIEDPYLRERKADIQQVGERILKVLTGSAGHLPPTGEAAANIIVVAHDISPADMLQFRES 180
           +IEDPYLRERKADIQQVGERILKVLTGSA HLPP+GEAAANII+VAHDISPADMLQFRES
Sbjct: 121 EIEDPYLRERKADIQQVGERILKVLTGSATHLPPSGEAAANIIIVAHDISPADMLQFRES 180

Query: 181 AFAGFVTDLGGPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLIIDGDAGVVIVDPSPL 240
            FAGFVTDLGGPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLIIDGDAGVVIVDPSPL
Sbjct: 181 TFAGFVTDLGGPNSHTAIVARSLAIPAAVGMHNASVLVKHDDVLIIDGDAGVVIVDPSPL 240

Query: 241 VLAQYRARQERLLRERKKLSRLKKTPAITQDGEPITLLANIELPNDAAPAFEAGAMGIGL 300
           VLAQYRARQERLLRERKKLSRLKKTPAITQDGEPITLLANIELP DA  AFEAGAMGIGL
Sbjct: 241 VLAQYRARQERLLRERKKLSRLKKTPAITQDGEPITLLANIELPGDAVTAFEAGAMGIGL 300

Query: 301 FRSEFLFMGRAGHLEKFPSEDEQFESYKQAVIAMKGRVVTIRTLDVGADKPLDADEETAL 360
           FRSEFLFMGRAGHLEKFPSEDEQFE YKQAVIAMKGR VTIRTLDVGADKPLD DEETAL
Sbjct: 301 FRSEFLFMGRAGHLEKFPSEDEQFEHYKQAVIAMKGRSVTIRTLDVGADKPLDEDEETAL 360

Query: 361 NPALGLRAIRYCLSEPQMFLTQLRAILRASAYGPIKLLVPMMAHAFEIDQTLSMIEQAKQ 420
           NPALGLRAIRYCLSEPQMFLTQLRAILRASA+GPIKLLVPMMAHAFEIDQTL+MI+QAKQ
Sbjct: 361 NPALGLRAIRYCLSEPQMFLTQLRAILRASAFGPIKLLVPMMAHAFEIDQTLAMIDQAKQ 420

Query: 421 QLRDRKQKFDEDIPIGAMIEIPAAALALPLFIKRLDFLSIGTNDLIQYTLAIDRVDHEVA 480
           QLR+RKQKFDE+IP+GAMIEIPAAALALPLF+KRLDFLSIGTNDLIQYTLAIDRVDHEVA
Sbjct: 421 QLRERKQKFDEEIPVGAMIEIPAAALALPLFVKRLDFLSIGTNDLIQYTLAIDRVDHEVA 480

Query: 481 HLYDPLHPAVLFLLSTVISQGRKAGIPVSVCGEMAGDLKWTRLLLGMGLLEFSMHPSQIL 540
           HLYDPLHPAVLFLLSTVISQGRKAGIPVSVCGEMAGDLKWTRLLLGMGLLEFSMHPSQIL
Sbjct: 481 HLYDPLHPAVLFLLSTVISQGRKAGIPVSVCGEMAGDLKWTRLLLGMGLLEFSMHPSQIL 540

Query: 541 SVKNEILNSDLRLLEPQVKKVLRATEPAAINAAMAQLQALQAEAVELDTKIAARR 595
           SVKNEILNSDLRLLEPQVKKVLRATEPAAI AAM QLQALQAE V  + K+A RR
Sbjct: 541 SVKNEILNSDLRLLEPQVKKVLRATEPAAITAAMTQLQALQAEPVVTEAKVARRR 595


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,717,588
Number of extensions: 71656
Number of successful extensions: 230
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 505
Effective length of database: 1,188,985
Effective search space: 600437425
Effective search space used: 600437425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)