BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0094.p
         (511 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309427|ref|YP_003773519.1| Mg(2+) chelatase family protein...   784   0.0  

>gi|300309427|ref|YP_003773519.1| Mg(2+) chelatase family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 507

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/509 (78%), Positives = 451/509 (88%), Gaps = 4/509 (0%)

Query: 1   MSLAVLRSRALAGMSALPVTVEVHLANGLPAFTIVGLPDTEVKEARDRVRAALQNARFEF 60
           MSLAVLRSRALAGM+A PVTVEVHLANGLP+F IVGLP+ EVKEARDRVRAALQNARFEF
Sbjct: 1   MSLAVLRSRALAGMNAPPVTVEVHLANGLPSFAIVGLPEAEVKEARDRVRAALQNARFEF 60

Query: 61  PARRITINLAPADLPKESGRFDLAMALGILAASGQIPADRLDEHEYAGELSLSGQLLPIR 120
           PARRIT+NLAPADLPKESGRFDLA+ALGILAAS QIP DRLD++EYAGELSLSGQLLPIR
Sbjct: 61  PARRITVNLAPADLPKESGRFDLAIALGILAASQQIPGDRLDDYEYAGELSLSGQLLPIR 120

Query: 121 GALAMTCAIQRDTQAHAETAGHQRSFILPAANADEAALVPQACILPATSLLDVCAHFSTR 180
           GALAMTCA+Q    A       +R+FILPAANADEAALV QA I+PA SLL+VCAHF++R
Sbjct: 121 GALAMTCAMQHGASADE----RRRAFILPAANADEAALVTQAEIVPARSLLEVCAHFTSR 176

Query: 181 DQRERLQPHQARAISPRPAYPDFSDIKGQLQARRAMEVAAAGQHSMLLVGPPGAGKSMLA 240
           D+  RL  H+ +  +  P YPDFS+IKGQL ARRAMEVAAAG+HSMLLVGPPGAGKSMLA
Sbjct: 177 DESTRLARHRPQQDALAPVYPDFSEIKGQLLARRAMEVAAAGRHSMLLVGPPGAGKSMLA 236

Query: 241 TRFPGILPPMTQEQALESAAVQSLSGSFDISRWQQRPFRAPHHTASAVALVGGGSTPRPG 300
           TRFPGILPPMT+ +ALESAAV+SL+G FD +RW+QRPFRAPHHTASAVALVGGGS PRPG
Sbjct: 237 TRFPGILPPMTEAEALESAAVRSLTGGFDPARWRQRPFRAPHHTASAVALVGGGSPPRPG 296

Query: 301 EISLAHHGVLFLDEIAEYPRSVLDVLRQPMESGRITISRAARQAEFPARFQLVAAMNPCP 360
           EISLAHHGVLFLDEIAEY RSVL+VLRQPMESG+ITISRAARQA+FPARFQL+AAMNPCP
Sbjct: 297 EISLAHHGVLFLDEIAEYRRSVLEVLRQPMESGQITISRAARQADFPARFQLLAAMNPCP 356

Query: 361 CGLHGEASGRCRCTPELVKRYQARLSGPLLDRIDMQLQVGALSPAELAAHQPGEPSAAIA 420
           CG HG+ASG+CRC+PE+V+RYQ RLSGPLLDRIDMQLQV ALSP ELA    GE +A IA
Sbjct: 357 CGYHGQASGQCRCSPEMVRRYQQRLSGPLLDRIDMQLQVAALSPGELAVQASGESTARIA 416

Query: 421 QRVALAFDLQLQRQGKPNSQLSGSEIDRYCQPDQAASQLLQAAMVRLEWSARAYHRVLKL 480
            RVA+AF+ Q+ RQGKPNS L+G+EIDR+CQP   A+QLLQ AM+RL WSARAYHRVLKL
Sbjct: 417 ARVAVAFERQISRQGKPNSALAGAEIDRHCQPGPDAAQLLQTAMLRLGWSARAYHRVLKL 476

Query: 481 ARTIADLATSDALGQAHVAEAIQYRRGLA 509
           ART+ADLA ++ + + HVAEAIQYRRGL+
Sbjct: 477 ARTMADLAAAEQIDRQHVAEAIQYRRGLS 505


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,676,004
Number of extensions: 74552
Number of successful extensions: 393
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 392
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 422
Effective length of database: 1,198,455
Effective search space: 505748010
Effective search space used: 505748010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)