BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0089.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferas...   607   e-175
gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransfer...    65   1e-11

>gi|300309422|ref|YP_003773514.1| phosphatidate cytidiltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 313

 Score =  607 bits (1565), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/313 (97%), Positives = 309/313 (98%)

Query: 1   MNPQTTLIALFAGVFAVLALASAIGGLLRWRLAGRNSSVVDNLNARIKAWWWMIGALALA 60
           M  Q TLIALFAGVFAVLALAS++GGLLRWRLAGRNSSVVDNLNARIKAWWWMIGALALA
Sbjct: 1   MTAQDTLIALFAGVFAVLALASSVGGLLRWRLAGRNSSVVDNLNARIKAWWWMIGALALA 60

Query: 61  FWMGKTGVVVLFAFISLQALREFISVTYTRVGDHRALLWCFFVFLPLQYVLIWMDWYGLF 120
           FWMGKTGVVVLFAFISLQALREFISVTYTRVGDHRALLWCFFVFLPLQYVLI MDWYGLF
Sbjct: 61  FWMGKTGVVVLFAFISLQALREFISVTYTRVGDHRALLWCFFVFLPLQYVLIGMDWYGLF 120

Query: 121 SILIPVYAFLLLPISASLSADTKHFLERAAKVQWGLMICVYCISHVPALLTLSIPGFQGR 180
           SILIPVYAFLLLPISASLSADTKHFLERAAKVQWGLMICVYCISHVPALLTL+IPGF+GR
Sbjct: 121 SILIPVYAFLLLPISASLSADTKHFLERAAKVQWGLMICVYCISHVPALLTLAIPGFEGR 180

Query: 181 NLQLIVFLVLTVQSSDVFQYVWGKLFGKRKLAPQISPSKTLEGLVGGVLTSTAVGAALHW 240
           NLQLIVFLVLTVQSSDVFQYVWGKLFGKRKLAPQISPSKTLEGLVGGVLTSTAVGAAL+W
Sbjct: 181 NLQLIVFLVLTVQSSDVFQYVWGKLFGKRKLAPQISPSKTLEGLVGGVLTSTAVGAALYW 240

Query: 241 ITPFNVWQAALVALTINILGFFGGFVLSAIKRDRGLKDWGAMIEGHGGMLDRVDSISFSA 300
           ITPFNVWQAALVALTINILGFFGGFVLSAIKRDRGLKDWGAMIEGHGGMLDRVDSISFSA
Sbjct: 241 ITPFNVWQAALVALTINILGFFGGFVLSAIKRDRGLKDWGAMIEGHGGMLDRVDSISFSA 300

Query: 301 PIFFHILRYWWVP 313
           PIFFHILRYWWVP
Sbjct: 301 PIFFHILRYWWVP 313


>gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 13/132 (9%)

Query: 177 FQGRNLQLIVFLVLTVQSSDVFQYVWGKLFGKRKLAPQISPSKTLEGLVGG----VLTST 232
           FQ   L L+  + + V  +D+  Y  GK FG+ KLAP ISP K+ EG VGG    ++ S 
Sbjct: 128 FQRAPLYLLSVMAV-VWVADIGAYFSGKGFGRHKLAPTISPGKSWEGAVGGWLAVLVISA 186

Query: 233 AVGAALHWITPFNV-------WQAALVALTINILG-FFGGFVLSAIKRDRGLKDWGAMIE 284
           AV  ++     F         W   +  LT+ +     G    S +KR  G+KD   ++ 
Sbjct: 187 AVAMSMGAGETFQYHLYSRWGWLGFVGVLTVMVAASVVGDLFESQLKRRAGMKDSSNLLP 246

Query: 285 GHGGMLDRVDSI 296
           GHGG+LDR+D++
Sbjct: 247 GHGGVLDRIDAL 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 966,472
Number of extensions: 40306
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 2
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 130 (54.7 bits)