BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0088.p
         (668 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309421|ref|YP_003773513.1| transmembrane protein [Herbaspi...  1037   0.0  

>gi|300309421|ref|YP_003773513.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 668

 Score = 1037 bits (2681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 605/668 (90%), Positives = 634/668 (94%)

Query: 1   MKNDNHAGLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFN 60
           M+NDN AGLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLF 
Sbjct: 1   MQNDNQAGLPELTLRGMLLGALITVVFTASNVYLGLKVGLTFSSAIPAAVISMAVLRLFA 60

Query: 61  NANILENNMVQTQASAAGTLSSIIFILPGLVMMGHWQGFPFLQTLGICAAGGMLGVMFSI 120
           NANILENNMVQTQASAAGTLSS+IFILPGL+MMGHWQGFPFLQTLGICAAGGMLGVMFSI
Sbjct: 61  NANILENNMVQTQASAAGTLSSVIFILPGLLMMGHWQGFPFLQTLGICAAGGMLGVMFSI 120

Query: 121 PLRRVMVVQSALPYPEGVAAAEILRVGSADAGGGEETRRGLRDILFGGSLAAVFSLISSG 180
           PLRRVMVVQ  LPYPEGVAAAEILRVGSADA GGEE+RRGLRDILFGG+LAA FS+ +SG
Sbjct: 121 PLRRVMVVQGELPYPEGVAAAEILRVGSADADGGEESRRGLRDILFGGALAAGFSVAASG 180

Query: 181 LKLFSESISLWLTAGASVVRLTMGFSLALVGAGYMIGIVSGIAILIGLVLAWGVAVPYLT 240
           LK+F+ES+SLW  AGAS VRLTMGFSLALVGAGYMIGIVSGIAILIGLVLAWGVAVPYLT
Sbjct: 181 LKVFAESMSLWFAAGASAVRLTMGFSLALVGAGYMIGIVSGIAILIGLVLAWGVAVPYLT 240

Query: 241 AVTAHAPDLALSDFANGLWKSQVRFIGAGMIGVAAIWTLATLFKPMLDGVKASLSTLARR 300
           AVT HA D++L+DFANGLWKSQVRFIGAGMIGVAAIWTLATLF PM+ GVKASLSTLARR
Sbjct: 241 AVTPHAADVSLADFANGLWKSQVRFIGAGMIGVAAIWTLATLFGPMVQGVKASLSTLARR 300

Query: 301 QQGSTERTDQDLSPRWIIVISLGMIALLAVVFASFLSGAPVSPGLFIGLVVYAVVFAFVF 360
           QQGSTERTDQD+SPRWI++ISL MI LLAVVFASFL+GAPVSP LF GLVVYAVVFAFVF
Sbjct: 301 QQGSTERTDQDMSPRWIVIISLAMIGLLAVVFASFLAGAPVSPALFAGLVVYAVVFAFVF 360

Query: 361 GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVSVLLLVSGAVDPLLATPEGSKLAIAVA 420
           GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVS+LLL SG VD LLATPEG KLAIA+A
Sbjct: 361 GFLVAAACGYMAGLIGSSSSPISGIGIVAVILVSLLLLASGMVDTLLATPEGGKLAIAIA 420

Query: 421 LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQVALLVGCVVGALIIPPVLNLLYHAY 480
           LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQVALLVGCVVGAL+IPPVL LLY+AY
Sbjct: 421 LFVTAAIIAVAAIANDNLQDLKTGQLVGATPWRQQVALLVGCVVGALVIPPVLTLLYNAY 480

Query: 481 GFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTMLGVGVALGIVLIVIDWLLA 540
           GFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTML VGV LGI+LIVIDWLLA
Sbjct: 481 GFTGALPRAGMDAAQALAAPQATLMTAIATGIFTRELNWTMLTVGVGLGILLIVIDWLLA 540

Query: 541 RRGGVARLPVLAVGIGIYLPPMVSSALFLGALLGWLIERVLRRRAQAAGADFEAYADKPR 600
           RRGGVARLPVLAVGIGIYLPP+VSSALF+GALLGW IER LRRRA AAGA+ EAYADKPR
Sbjct: 541 RRGGVARLPVLAVGIGIYLPPVVSSALFVGALLGWFIERALRRRALAAGANVEAYADKPR 600

Query: 601 QRGILVASGLIVGESLVGVLLAAIIGFTGKDAPLALVSEAFESTGQWLGLAALALILLAF 660
           QRGILVASGLIVGESLVGV+LA +IGFTGKDAPLALVS +FES GQWLGLAA ALILLAF
Sbjct: 601 QRGILVASGLIVGESLVGVVLAGVIGFTGKDAPLALVSGSFESIGQWLGLAAFALILLAF 660

Query: 661 ARRIMPVR 668
           ARRIMP R
Sbjct: 661 ARRIMPAR 668


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.140    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,782,329
Number of extensions: 73731
Number of successful extensions: 487
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 576
Effective length of database: 1,184,250
Effective search space: 682128000
Effective search space used: 682128000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 134 (56.2 bits)