BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0078.p
         (281 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309412|ref|YP_003773504.1| drug/metabolite transporter (DM...   442   e-125

>gi|300309412|ref|YP_003773504.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  442 bits (1138), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/281 (85%), Positives = 257/281 (91%)

Query: 1   MNLAVIALVLTAALLHASWNALLKSSHDRLASLSLMTLGAGLGAIPLLLWRPLPHIDSWC 60
           MN+AVIALVL AALLHASWNALLKSSHDRLASL+LMTLGAG+GAIPL+LWRP P   SW 
Sbjct: 1   MNIAVIALVLAAALLHASWNALLKSSHDRLASLALMTLGAGIGAIPLILWRPWPEPASWF 60

Query: 61  YILLSGLLHTGYNLFLIRAYRIGDFGQSYPIARGSSPLLVALGAALFAGEQLGIYTVIGI 120
           YI+LSGLLHTGYNLFLIRAYRIGDFGQSYPIARGSSPLLVALGAA+FAGEQLG+YTVIGI
Sbjct: 61  YIILSGLLHTGYNLFLIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGLYTVIGI 120

Query: 121 TLVSVGIVSLADLRAMRRREHLSAPLAALATGAFIAAYTITDGIGARLAGDAIAYAGWLF 180
            LVS+GIVSLADLRAMR REHL+ PLAA ATGAFIAAYTITDGIGARLAGDA++YAGWLF
Sbjct: 121 LLVSLGIVSLADLRAMRSREHLAGPLAAFATGAFIAAYTITDGIGARLAGDAMSYAGWLF 180

Query: 181 LADSFALAVIYHCQHGRSPVVLSHKETWIGLGGGLMSLLAYGIVIWAVTLAPMGMVSALR 240
           + DS ALAVIY  +HGR P+ L  +ETW GLGGG+MSLLAYGIVIWAVTLAPMGMVSALR
Sbjct: 181 VLDSIALAVIYQRRHGRWPIALGRRETWTGLGGGVMSLLAYGIVIWAVTLAPMGMVSALR 240

Query: 241 ETSVLFALLIGTLFLGEKLTLRRVLSCLVIAAGAIVLGAHH 281
           ETSVLFALLIG LFLGE+LTLRRVLS +VI AG IVLG HH
Sbjct: 241 ETSVLFALLIGALFLGERLTLRRVLSGVVIVAGTIVLGTHH 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 720,634
Number of extensions: 26821
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,222,130
Effective search space: 240759610
Effective search space used: 240759610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)