BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0077.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 471 e-134 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 298 3e-82 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 275 3e-75 gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 264 5e-72 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 263 1e-71 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 471 bits (1211), Expect = e-134, Method: Compositional matrix adjust. Identities = 233/240 (97%), Positives = 238/240 (99%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 EGVKLNDPKV+LNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKK+SRR+AVLVAEKL Sbjct: 61 EGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLVAEKL 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVL+VMK Sbjct: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 Query: 181 QLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 QLAEEGMTMVVVTHEMGFAREVSDRV FIDQGVIMEEGPPQQVLG+P HERTRDFLRKVL Sbjct: 181 QLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDFLRKVL 240 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 298 bits (762), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 145/240 (60%), Positives = 182/240 (75%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 MI+V ++ K FG+ +L+ + + EVVC+IGPSGSGKST LRC+NGLE GDI I Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 +G +++ D++ LR +GMVFQRFNLFPH TVLEN+ P+ V ++R QA A L Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMSL 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 L KVGL + DA+P QLSGGQQQRVAIAR+LAM+P+ +LFDEPTSALDPELVGEVL+VM+ Sbjct: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 Query: 181 QLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 LA +GMTM+VVTHEMGFAREV+DRV F+ G I+E G QVL EP H RT+DFLR+V+ Sbjct: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 275 bits (702), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 142/246 (57%), Positives = 182/246 (73%), Gaps = 7/246 (2%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDI-- 58 +++V+ L+K FG +L+ +D + +VV VIGPSGSGKSTFLRCLNGLE+ G + Sbjct: 5 IVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVKV 64 Query: 59 ----FIEGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAV 114 +EG ++ P+ L+ LRAE+GMVFQ FNLFPH+TVL+N+ +AP ++ MSR+ A Sbjct: 65 CGRPVVEGGRMM-PEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQ 123 Query: 115 LVAEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGE 174 A +LL+KVGL K A+P LSGGQ+QRVAIARALAMEP+VMLFDEPTSALDPELVGE Sbjct: 124 QQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPELVGE 183 Query: 175 VLSVMKQLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRD 234 VL V++ LA EGMTM++VTHEMGFAREV+D V +D G I+E GPP + P RTR Sbjct: 184 VLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQARTRS 243 Query: 235 FLRKVL 240 FL+ +L Sbjct: 244 FLQTML 249 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 264 bits (674), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 127/240 (52%), Positives = 171/240 (71%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 MI++N + K +G +L ++ +VV V GPSGSGKST ++ +NGLE G I + Sbjct: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 +GV + DPK +L+ LRA +GMVFQ F LFPH+++ ENL + ++V S+ +A K Sbjct: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 L +VGLL D FP QLSGGQQQRVAIARAL+M+P MLFDEPTSALDPE++ EVL VM Sbjct: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 QLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 LA+EGMTM+VVTHEMGFAR+V++RV F+D+GV++E+ + +P ER RDFL K++ Sbjct: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFAQPRSERARDFLAKII 240 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 263 bits (671), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 125/236 (52%), Positives = 178/236 (75%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 +I ++ ++KRFG +L+GI ++ EV+ +IG SGSGKST LRC+NGLE + +G+I + Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 G KL +++L LR ++GM+FQ+FNLFPH++V N+++APM VK +S +A+ A+ Sbjct: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKAN 122 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 L+KVGL K DA+P+QLSGGQQQRVAIARAL+M P+ +L DE TSALDPELV EVL+VM+ Sbjct: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 Query: 181 QLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFL 236 LA+EGMT+++VTHEM FAREV +R+ F+ QG + E GPP+++ G P + F+ Sbjct: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFI 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 700,585 Number of extensions: 27282 Number of successful extensions: 542 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 284 Number of HSP's successfully gapped: 150 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)