BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0074.p
         (304 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309408|ref|YP_003773500.1| arginase/agmatinase/formimionog...   562   e-161
gi|300311047|ref|YP_003775139.1| arginase/agmatinase/formimionog...    74   1e-14

>gi|300309408|ref|YP_003773500.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 302

 Score =  562 bits (1449), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/302 (92%), Positives = 286/302 (94%)

Query: 1   MNKIRMMGAPTDVGASRRGASMGPAALRVAELQRGLQQHGVEVIDGGDLGGPANPQQPPV 60
           MN+IRMMGAPTDVGASRRGASM PAALRVAELQRGLQQHG++VIDGGDL GPANPQQPPV
Sbjct: 1   MNRIRMMGAPTDVGASRRGASMAPAALRVAELQRGLQQHGLDVIDGGDLAGPANPQQPPV 60

Query: 61  QGLRHLEQVVQWNQAVFEAVASSLAQGEVPLLMGGDHALAVGSIAAVAAHCRRHGKPLRV 120
           QGLRHLEQVVQWNQ V EAVA  LA GE+PLLMGGDHALAVGSIAAVAAHCR  GK LRV
Sbjct: 61  QGLRHLEQVVQWNQTVHEAVAQCLADGELPLLMGGDHALAVGSIAAVAAHCRSQGKELRV 120

Query: 121 LWLDAHADANTSQSTPTGNIHGMPVACLLGVGPQALTTIGGQTPALQPQQICQVGIRSVD 180
           LWLDAHADANTSQSTPTGNIHGMPVACLLGVGP ALT IGGQTPALQPQQICQVGIRSVD
Sbjct: 121 LWLDAHADANTSQSTPTGNIHGMPVACLLGVGPAALTAIGGQTPALQPQQICQVGIRSVD 180

Query: 181 REEKRHLRELGVRVYDMRHIDEHGMRQTMEEALAGLDADTHLHVSFDVDFLDAALAPGVG 240
           REEKRHLRELGVRV+DMRHIDE+GMRQTMEEALAG+   THLHVSFDVDFLDAALAPGVG
Sbjct: 181 REEKRHLRELGVRVFDMRHIDEYGMRQTMEEALAGVGPQTHLHVSFDVDFLDAALAPGVG 240

Query: 241 TAVPGGPTYREAQLCMEMIADTGRLASLDIMELNPACDVRNQTAELVVDLVESLFGKSTL 300
           TAVPGGPTYREAQLCMEMIADTG LASLD+MELNPACDVRNQTAELVVDLVESLFGKSTL
Sbjct: 241 TAVPGGPTYREAQLCMEMIADTGALASLDVMELNPACDVRNQTAELVVDLVESLFGKSTL 300

Query: 301 IR 302
           IR
Sbjct: 301 IR 302


>gi|300311047|ref|YP_003775139.1|
           arginase/agmatinase/formimionoglutamate hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 129/305 (42%), Gaps = 47/305 (15%)

Query: 4   IRMMGAPTDVGASRR-GASMGPAALRVAEL--------QRGLQQHGVEVIDGGDLGGPAN 54
           +  +G P D+G S R G   GP  +R   +         R      ++V D GD+    N
Sbjct: 37  VGFVGVPLDIGTSNRSGTRFGPRQIRTESVLLRPYNMATRAAPFDSLKVADLGDVA--LN 94

Query: 55  PQQPPVQGLRHLEQVVQWNQAVFEAVASSLAQGEVPLLMGGDHALAVGSIAAVAAHCRRH 114
           P    +  +R +E          EA     A G   + +GGDH L +  + A+A    R+
Sbjct: 95  PYSL-LDSVRMIE----------EAYDRIYATGCKTISLGGDHTLTLPILRALA----RY 139

Query: 115 GKPLRVLWLDAHADANTSQSTPTGNIHGMPVACLLGVGPQALTTIGGQTPALQPQQICQV 174
             P+ ++ +DAHAD N + +      HG P       G             L PQ++ Q+
Sbjct: 140 RGPVGLIHVDAHADVNDTMNGEK-IAHGTPFRRAFEEG------------LLDPQRVVQI 186

Query: 175 GIRSVDR--EEKRHLRELGVRVYDMRHIDEHGMRQTMEEALAGLDADTHLHVSFDVDFLD 232
           G+R      ++    R  G RV          +   MEE  A +  D  ++++FD+D LD
Sbjct: 187 GLRGTGYHADDFDWCRAQGFRVVQAEECWHRSLAPLMEEVRAQM-GDGPVYLTFDIDGLD 245

Query: 233 AALAPGVGTAVPGGPTYREAQLCMEMIADTGRL--ASLDIMELNPACDVRNQTAELVVDL 290
            A APG GT   GG T ++    +E+I     L   S D++E++P  D    TA +  +L
Sbjct: 246 PAFAPGTGTPEIGGLTVQQG---LEIIRGCKGLDIVSADVVEVSPPYDQAGTTALVAANL 302

Query: 291 VESLF 295
              + 
Sbjct: 303 AYEML 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 949,685
Number of extensions: 39179
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 304
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 219
Effective length of database: 1,217,395
Effective search space: 266609505
Effective search space used: 266609505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)