BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0073.p
         (633 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309406|ref|YP_003773498.1| potassium uptake protein [Herba...  1193   0.0  

>gi|300309406|ref|YP_003773498.1| potassium uptake protein
           [Herbaspirillum seropedicae SmR1]
          Length = 633

 Score = 1193 bits (3087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/633 (95%), Positives = 622/633 (98%)

Query: 1   MSSSHTNPSLSLRSRKFHMITLAALGVVFGDIGTSPLYALKECFSPDHGIAFSPGAVLGI 60
           MSSSHTNPSLSLRS KFH+ITLAALGVVFGDIGTSPLYALKECFSPDHGIAFSPGAVLGI
Sbjct: 1   MSSSHTNPSLSLRSSKFHLITLAALGVVFGDIGTSPLYALKECFSPDHGIAFSPGAVLGI 60

Query: 61  ISMLFWAITIVVTIKYVMFVLRADNNGEGGVLALMALSLRSAVSGSPRAKLLLMLGVFGA 120
           ISMLFW+I+IVVTIKYVMFVLRADNNGEGGVLALMALSLRSA+SGSPRAKLL+MLGVFGA
Sbjct: 61  ISMLFWSISIVVTIKYVMFVLRADNNGEGGVLALMALSLRSALSGSPRAKLLMMLGVFGA 120

Query: 121 CMFYGDVVITPAISVLSAVEGLEIAAPSTAHVVIPLTLVIVVVLFLIQRHGTSVVGRFFG 180
           CMFYGDVVITPAISVLSAVEGLEIAAP TAH VIPLTLVIVV+LFLIQRHGTSVVGRFFG
Sbjct: 121 CMFYGDVVITPAISVLSAVEGLEIAAPQTAHAVIPLTLVIVVILFLIQRHGTSVVGRFFG 180

Query: 181 PVMFLWFFSLALLGLYNIVKAPEVLVAINPYYAVHFMAEHSLQAFIVLGSVVLVLTGAEA 240
           PVMFLWFFSLALLGLYNIVKAPEVLVAINPYYAVHFMAEHSLQAFIVLGSVVLVLTGAEA
Sbjct: 181 PVMFLWFFSLALLGLYNIVKAPEVLVAINPYYAVHFMAEHSLQAFIVLGSVVLVLTGAEA 240

Query: 241 LYADMGHFGIKPIRYAWLFTVMPSLLINYFGQGANLIANPKAIANPFYLMIPEPLVLPMV 300
           LYADMGHFGIKPIRYAWLFTVMPSLLINYFGQGANLIANP AI NPFYLMIP+PLVLPMV
Sbjct: 241 LYADMGHFGIKPIRYAWLFTVMPSLLINYFGQGANLIANPDAIKNPFYLMIPDPLVLPMV 300

Query: 301 LLATCATVIASQAVISGAFSLTSQAILLGFVPRMRILHTSEDEQGQIYIPLINWMLLVLV 360
           +LATCATVIASQAVISGAFSLTSQAILLGFVPRMRILHTSEDEQGQIYIPLINWMLLV+V
Sbjct: 301 VLATCATVIASQAVISGAFSLTSQAILLGFVPRMRILHTSEDEQGQIYIPLINWMLLVVV 360

Query: 361 VAVVLAFKKSDNLAAAYGVAVTTTMVITTMLLGVVMRHIWKWRNSALVVTITFLLVVDLA 420
           VAVVLAFKKSDNLAAAYGVAVTTTMVITTMLLGVVMRHIWKWR  A+V  I+  LVVD+A
Sbjct: 361 VAVVLAFKKSDNLAAAYGVAVTTTMVITTMLLGVVMRHIWKWRMPAVVAAISCFLVVDVA 420

Query: 421 FFAANLLKLTEGGWFPLVIGGAAFFLLMTWYSGRMLLRMRIKDDGIPIEPFIEGLLAHPP 480
           FFAANLLKLTEGGWFPLVIGGAAFFLLMTWYSGRMLLRMRIKDDGIPIEPFIEGLLAHPP
Sbjct: 421 FFAANLLKLTEGGWFPLVIGGAAFFLLMTWYSGRMLLRMRIKDDGIPIEPFIEGLLAHPP 480

Query: 481 HRVGGTAVFMTGNIATVPVALLHNLKHNRILHERVFFLKISIWDVPYVADSERLTMKDLG 540
           HRVGGTAVFMTGNIATVPVALLHNLKHNRILHERVFFLKISIWDVPYVADSERLTMK+LG
Sbjct: 481 HRVGGTAVFMTGNIATVPVALLHNLKHNRILHERVFFLKISIWDVPYVADSERLTMKELG 540

Query: 541 GDIYLLRAAFGFKEAPEVQKVMTLTEQQFGHHFDLMDTSFFLARDTVVPSKLLGMSLWRE 600
           GD+YLLRAAFGFKEAPEVQKVMTLTEQQFGHHFDLMDTSFFLARDTVVPSKLLGMSLWRE
Sbjct: 541 GDVYLLRAAFGFKEAPEVQKVMTLTEQQFGHHFDLMDTSFFLARDTVVPSKLLGMSLWRE 600

Query: 601 RIFAWMYQNGAKPSDFFHIPANRVVELGTKVEI 633
           R+FAWMYQNGAKPSDFFHIPANRVVELGTKVEI
Sbjct: 601 RLFAWMYQNGAKPSDFFHIPANRVVELGTKVEI 633


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,871,251
Number of extensions: 76570
Number of successful extensions: 276
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 542
Effective length of database: 1,188,985
Effective search space: 644429870
Effective search space used: 644429870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 133 (55.8 bits)